| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,139,188 – 17,139,281 |
| Length | 93 |
| Max. P | 0.514046 |
| Location | 17,139,188 – 17,139,281 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 62.83 |
| Shannon entropy | 0.64667 |
| G+C content | 0.38697 |
| Mean single sequence MFE | -22.44 |
| Consensus MFE | -7.41 |
| Energy contribution | -7.97 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.514046 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17139188 93 - 21146708 CGCCAUCUAGUUGUUAAAUU--UGACUUGGUUCUGUUGGUAACAG---UCUCUGUCUCUGUUAUUUGCAGUGGU--CUAAAAAAGGGGAAA-CCCAUCAUA---------------- .((((((.(((((.......--))))).))).((((..(((((((---.........)))))))..)))).)))--........(((....-)))......---------------- ( -24.90, z-score = -2.46, R) >droEre2.scaffold_4845 11283120 94 - 22589142 CGCCCUCUAGUUGUUAAAUU--CAAAUUUGUUAUGUUAACAACAGCGAUGCCUAACUCUGUUAUUUACCGAUGU--CUAAACA-GGGAAG--CCCAUCAUA---------------- .........((((((((...--((....)).....))))))))...((((.....(((((((............--...))))-)))...--..))))...---------------- ( -16.56, z-score = -0.81, R) >droYak2.chr2R 9089267 95 + 21139217 CGCCCUCUAGUUGUAAGAUU--UGAGUUAGUUCUGUUCACAACAGAGAAACCCAACUCUGUUAUUAGCAGAUGU--CUAAAGAGGGGAAA--CCCAUCAUA---------------- ....(((.((((....))))--.)))((((.((((((.(.(((((((........))))))).).))))))...--)))).(((((....--))).))...---------------- ( -28.20, z-score = -3.19, R) >droSec1.super_9 469505 96 - 3197100 CGCCAUCUAGUUGUUAAUUA--UGAAUUUAUUCUGUUCAUAACAGUGCUACCUCAUUCUGUUAUUAGCAGAGGU--CUAAAAAAGGGGAAA-CCCAUCAUA---------------- ..................((--(((.....(((((((.(((((((............))))))).)))))))..--........(((....-))).)))))---------------- ( -24.60, z-score = -2.96, R) >droSim1.chr2R 15789778 97 - 19596830 CGCCCUCUAGUUGUUAAAAU--UGAAUUUGUUUUUUUCAUAACAGUGCAGCCUCAUUCUGUUAUUAGCAGAGGU--CUAAAAAAGGGGAAAGCCCAUCAUA---------------- .(.(((((.((((.......--((((.........))))((((((............)))))).))))))))).--).......(((.....)))......---------------- ( -17.60, z-score = 0.07, R) >dp4.chr3 3607381 116 - 19779522 UACACUGCAUUUAUCGUUUUGCCCAGGUUAUUUUAGACAGCUCAG-AAUAUCGGAAUUUGAACUUCGCGCCUUUAGCUAAUAAUGUAUGCUACAUUUUACAGAGGCGCGCCAUCUGU ......(((..........))).(((((.......((.((.((((-(.........))))).))))((((((((.(.(((.((((((...))))))))))))))))))...))))). ( -22.80, z-score = 0.32, R) >consensus CGCCCUCUAGUUGUUAAAUU__UGAAUUUGUUCUGUUCAUAACAG_GAUACCUAACUCUGUUAUUAGCAGAGGU__CUAAAAAAGGGGAAA_CCCAUCAUA________________ ...............................(((((..(((((((............)))))))..))))).............(((.....)))...................... ( -7.41 = -7.97 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:40:22 2011