| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,134,865 – 17,134,923 |
| Length | 58 |
| Max. P | 0.761391 |
| Location | 17,134,865 – 17,134,923 |
|---|---|
| Length | 58 |
| Sequences | 6 |
| Columns | 75 |
| Reading direction | forward |
| Mean pairwise identity | 65.55 |
| Shannon entropy | 0.57217 |
| G+C content | 0.46034 |
| Mean single sequence MFE | -15.52 |
| Consensus MFE | -10.94 |
| Energy contribution | -9.92 |
| Covariance contribution | -1.02 |
| Combinations/Pair | 1.62 |
| Mean z-score | -0.51 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.761391 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17134865 58 + 21146708 --------GGUUUUCCAGCCAUAUAGUCAAGCUACCCUAAGGUGGUUUCUGCUGGCAAUGGAAUCA--------- --------....(((((((((..(((..((((((((....))))))))))).))))..)))))...--------- ( -18.30, z-score = -1.79, R) >droSim1.chr2R 15785495 58 + 19596830 --------GGCAUCCCAGCCAUAUAGUCAAGCUACCCUAAGGUGGUUUCUGCUGGCAAUGGAAUCA--------- --------....(((..((((..(((..((((((((....))))))))))).))))...)))....--------- ( -16.60, z-score = -0.57, R) >droSec1.super_9 465224 58 + 3197100 --------GGCAUCCCAGCCUUAUAGUCAAGCUACCCUAAGGUGAUUUCUGCUGGCAAUGGAAUCA--------- --------..(((.(((((.....(((((..((......)).)))))...)))))..)))......--------- ( -11.40, z-score = 0.87, R) >droYak2.chr2R 9084699 58 - 21139217 --------GGCAUCUCAGCCAUAUAGUCAAGCUACCCUAAGGUGGUUUCAGCUGAAAAUGGAAUCA--------- --------(((......)))...((((.((((((((....))))))))..))))............--------- ( -15.00, z-score = -1.30, R) >droEre2.scaffold_4845 11278776 58 + 22589142 --------GACAUGCCAGCCAUAUAGUCAAGCUACCCUAAGGUGGUUUCUGCUGGAAAUGGAAUCA--------- --------..(((.(((((.....((..((((((((....)))))))))))))))..)))......--------- ( -15.70, z-score = -0.94, R) >droAna3.scaffold_13266 4927540 75 + 19884421 GUACCCUCAUGUUUAUAAAAGUACAGGUGGAACUGCCUAAGUUAAUCCUUUUAAGGGGUGAUCCUUUUGGGGUUA ((((................))))((((......))))....(((((((...(((((....)))))..))))))) ( -16.09, z-score = 0.64, R) >consensus ________GGCAUCCCAGCCAUAUAGUCAAGCUACCCUAAGGUGGUUUCUGCUGGCAAUGGAAUCA_________ ..............(((((.........((((((((....))))))))..))))).................... (-10.94 = -9.92 + -1.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:40:22 2011