| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,519,796 – 3,519,886 |
| Length | 90 |
| Max. P | 0.688694 |
| Location | 3,519,796 – 3,519,886 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 68.74 |
| Shannon entropy | 0.61002 |
| G+C content | 0.46211 |
| Mean single sequence MFE | -19.84 |
| Consensus MFE | -10.52 |
| Energy contribution | -11.06 |
| Covariance contribution | 0.54 |
| Combinations/Pair | 1.48 |
| Mean z-score | -0.80 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.688694 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3519796 90 - 23011544 UAUAGUUGUUUGUUUCGCCGAAUAGAUGCCUCGAUACACACUCCUCCCGAAGGACACAUUCCUGACCAUCCUGGGAGGGAGGACUCCGGU ...((..((((((((....))))))))..))..........(((((((..((((.....))))..((.....))..)))))))....... ( -22.30, z-score = 0.80, R) >droAna3.scaffold_12916 5566517 74 - 16180835 ----UUCAAUCUUCUCUUUUAUGAAUUGUCUUG-----UAUUUGCCCU-----AUAUUUCUAUAGAAGCUAUAGGAUAAGAGAUAUAG-- ----..........((((((((((((.......-----.))))..(((-----(((((((....)))).)))))))))))))).....-- ( -12.90, z-score = -0.65, R) >droEre2.scaffold_4929 3554899 90 - 26641161 UAUAAUUAUUUGUUUCGCCAAAUAAAUGCCUCGCUACACAUUCCUCCCUAAGGACACUCCCUUGCCCAUCCUGGGAGCGAGGACUCCGCC .....(((((((......)))))))...(((((((.............(((((......)))))(((.....))))))))))........ ( -24.00, z-score = -3.10, R) >droYak2.chr2L 3509692 90 - 22324452 UAUAGUUGUUCGUUUCGCCGAAUAAGUACCUCGAUACACACUCCUCCCUAAGGACACUCUCUUGACCAUCCUGGGAGCUAGGAUGUCGCC ..((.(((((((......))))))).))...(((((..(....(((((..((((...((....))...)))))))))...)..))))).. ( -22.70, z-score = -0.98, R) >droSec1.super_5 1622121 90 - 5866729 UAUAGUUGUUUGUUUCGCCGAAUAAAUGCCUCGAUACACAUUCCUCCCGAAGGACACUUUCCUUAUCAUCCUGUGAGCGAGGACUCCGCC .....(((((((......)))))))...(((((...((((.........(((((.....))))).......))))..)))))........ ( -18.69, z-score = -0.93, R) >droSim1.chr2L 3473161 90 - 22036055 UAUAGUUGUUUGUUUCGCCGAAUAAAUGCCUCGAUACACAUUCCUCCCGCAGGACACUUUUCUUAUCAUCCUGGGAGCGAGGACUCCGCC .....(((((((......)))))))...(((((..........(((((..((((..............))))))))))))))........ ( -18.44, z-score = 0.04, R) >consensus UAUAGUUGUUUGUUUCGCCGAAUAAAUGCCUCGAUACACAUUCCUCCCGAAGGACACUUUCCUGACCAUCCUGGGAGCGAGGACUCCGCC .....(((((((......)))))))...(((((..........(((((..((((..............))))))))))))))........ (-10.52 = -11.06 + 0.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:03 2011