| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,125,372 – 17,125,474 |
| Length | 102 |
| Max. P | 0.783333 |
| Location | 17,125,372 – 17,125,474 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 62.54 |
| Shannon entropy | 0.62092 |
| G+C content | 0.44786 |
| Mean single sequence MFE | -17.45 |
| Consensus MFE | -7.35 |
| Energy contribution | -7.10 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.783333 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 17125372 102 - 21146708 AAACAAAAGUUUUGUUUAGCUUUUGUUU---CUGCUGCUGCUUUCGCUUUUGCCACCCGUUGCAUAUACAACAUUUUGUACCACCGUAGAACCGAACUACCCCAC .((((((((((......))))))))))(---(((((((.((....((....)).....)).)))..(((((....))))).....)))))............... ( -19.20, z-score = -1.96, R) >droPer1.super_2 3783643 83 - 9036312 AAAAAAAACUUUUGUUUGGCUUUUGUUUC-GAUGUCGUUGUCGUUGUCGUUGCCUGUCGGUGCAUGCCCCUCCCCUCUGCCCAC--------------------- .....((((....))))(((....((..(-((((.((....)).)))))..))..)))((.(((.............)))))..--------------------- ( -13.42, z-score = -0.48, R) >droEre2.scaffold_4845 11268985 93 - 22589142 GAACAAAAGUUUUGUUUAGCUUUUGUUU---CUGCUGCUGCUUUCGCCU------CUCGUUGCAUAUA---UACAUUGUACCUCGGUAGCAACGAAAUACCCCAC (((((((((((......)))))))))))---.((((((((.....((..------......)).((((---.....))))...)))))))).............. ( -20.40, z-score = -1.99, R) >droSec1.super_9 451334 92 - 3197100 AAACAAAAGUUUUGUUUAGCUUUUGUUUCUGCUGCUGCUGCUUUCGCUUUCGCCACCCGUUGCAUAUA-------------CACCGUAGAACCGAACUACCCCAC .((((((((((......))))))))))(((((.((....))....((...((.....))..)).....-------------....)))))............... ( -16.80, z-score = -1.18, R) >consensus AAACAAAAGUUUUGUUUAGCUUUUGUUU___CUGCUGCUGCUUUCGCCUUUGCCACCCGUUGCAUAUA___CAC_UUGUACCACCGUAGAACCGAACUACCCCAC (((((((((((......)))))))))))..........(((...((...........))..)))......................................... ( -7.35 = -7.10 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:40:21 2011