Locus 5018

Sequence ID dm3.chr2R
Location 17,122,689 – 17,122,781
Length 92
Max. P 0.780613
window6892

overview

Window 2

Location 17,122,689 – 17,122,781
Length 92
Sequences 3
Columns 105
Reading direction reverse
Mean pairwise identity 80.32
Shannon entropy 0.26872
G+C content 0.43464
Mean single sequence MFE -23.29
Consensus MFE -17.65
Energy contribution -18.43
Covariance contribution 0.78
Combinations/Pair 1.05
Mean z-score -1.75
Structure conservation index 0.76
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.67
SVM RNA-class probability 0.780613
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 17122689 92 - 21146708
-------------UAUUAAUCCAUAAUUAUGAGCCAGAGACAUGCAGCGCCUCUCCACUCGCAUCCAUGCAUGCUUAAUGCUCAUAUGCGAAUUUAGUCAGUCUU
-------------.(((((........(((((((..(((.(((((((((..........))).....)))))))))...))))))).......)))))....... ( -19.06, z-score =  -0.77, R)
>droYak2.chr2R 9072349 100 + 21139217
UAUUAAUCCAUUCUAUCAG--CAUAAUAAUGAGCCAGCGACAUGCAGUGCCUCUCCACUGGCAUCCAUGCAUGCCAAAUGCUCAUAUGCGAAUUUAGUCCUC---
..................(--((((....(((((....(.(((((((((((........)))))...)))))).)....)))))))))).............--- ( -25.70, z-score =  -2.25, R)
>droEre2.scaffold_4845 11266417 100 - 22589142
UAUUAAUCCAUUCUAUUAG--CAUAAUAAUGAGCCAGGGACAUGCAGUGCCCCUCCACUCGCAUCCAUGCAUGCCUAAUGCUCAUAUGCGAAUUUAGUCCUC---
..................(--((((....(((((..(((.((((((((((..........))))...)))))))))...)))))))))).............--- ( -25.10, z-score =  -2.22, R)
>consensus
UAUUAAUCCAUUCUAUUAG__CAUAAUAAUGAGCCAGAGACAUGCAGUGCCUCUCCACUCGCAUCCAUGCAUGCCUAAUGCUCAUAUGCGAAUUUAGUCCUC___
............................((((((..(((.((((((((((..........))))...)))))))))...)))))).................... (-17.65 = -18.43 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:40:20 2011