| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,117,893 – 17,117,987 |
| Length | 94 |
| Max. P | 0.700371 |
| Location | 17,117,893 – 17,117,987 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 78.09 |
| Shannon entropy | 0.42539 |
| G+C content | 0.53003 |
| Mean single sequence MFE | -29.58 |
| Consensus MFE | -19.37 |
| Energy contribution | -20.37 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.700371 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17117893 94 + 21146708 AGGAGUGGCCAAAUCCUGGCCGACACUCAACUACAAAUUGGCCA-GCAGGGCAGACAUGUGCAGAUGUCCUGCGACAGAUUCGCAGGCAAUUAUU ..(((((((((.....)))))...)))).......((((((((.-....))).(((((......)))))((((((.....)))))).)))))... ( -30.60, z-score = -1.39, R) >dp4.chr3 3586828 77 + 19779522 -----------GGUUUU--CCGGCGAAAGGCUGGUGGCUGGACACAUGUCUCUGCCACACACAUGGACCCCCCGCC-----CCCUAGCAAUUAUU -----------(((((.--.((((.....))))(((((.((((....))))..)))))......)))))....((.-----.....))....... ( -22.30, z-score = 0.04, R) >droEre2.scaffold_4845 11261619 94 + 22589142 AGGAGUGGCCAAAUCCUGGCCGACACUCAACUACAAAUUGGCCA-GCAGGGCAGACAUGUGCAGAUGUCCUGCGACAGAUUCACAGGCAAUUAUU ..(((((((((.....)))))...))))............(((.-((((((((............))))))))((.....))...)))....... ( -29.70, z-score = -1.46, R) >droYak2.chr2R 9067368 94 - 21139217 AGGAGUGGCCAAAUCCUGGCCGACACUCAACUACAAAUUGGCCA-GCAGGGCAGGCAUGUGCAGAUGUCCUGCGACAGAUUCACAGGCAAUUAUU ..(((((((((.....)))))...))))............(((.-((((((((.((....))...))))))))((.....))...)))....... ( -33.70, z-score = -2.16, R) >droSec1.super_9 443895 94 + 3197100 AGGAGUGGCCAAAUCCUGGCCGACACUCAACUACAAAUUGGCCA-GCAGGGCAGACAUGUGCAGAUGUCCUGCGACAGAUUCGCAGGCAAUUAUU ..(((((((((.....)))))...)))).......((((((((.-....))).(((((......)))))((((((.....)))))).)))))... ( -30.60, z-score = -1.39, R) >droSim1.chr2R 15768924 94 + 19596830 AGGAGUGGCCAAAUCCUGGCCGACACUCAACUACAAAUUGGCCA-GCAGGGCAGACAUGUGCAGAUGUCCUGCGACAGAUUCGCAGGCAAUUAUU ..(((((((((.....)))))...)))).......((((((((.-....))).(((((......)))))((((((.....)))))).)))))... ( -30.60, z-score = -1.39, R) >consensus AGGAGUGGCCAAAUCCUGGCCGACACUCAACUACAAAUUGGCCA_GCAGGGCAGACAUGUGCAGAUGUCCUGCGACAGAUUCGCAGGCAAUUAUU .......(((......(((((((..............))))))).((((((((............))))))))............)))....... (-19.37 = -20.37 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:40:19 2011