| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,108,775 – 17,108,867 |
| Length | 92 |
| Max. P | 0.849863 |
| Location | 17,108,775 – 17,108,867 |
|---|---|
| Length | 92 |
| Sequences | 13 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 64.16 |
| Shannon entropy | 0.73461 |
| G+C content | 0.65411 |
| Mean single sequence MFE | -44.88 |
| Consensus MFE | -20.35 |
| Energy contribution | -20.63 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.96 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.849863 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17108775 92 + 21146708 ------------------------GCGGGCUCGUCCAGCGGCUGCGGCGGCAGCAGCAGCUGCCAGUUGAUUGACCUGCUUCUGCAGCAGUUG-CUGCUUCAGGGCGGCCACUCCAC ------------------------...(((.(((((.((.((....)).))((((((((((((..(((....))).(((....))))))))))-)))))...))))))))....... ( -45.30, z-score = -1.02, R) >droSim1.chr2R 15759591 92 + 19596830 ------------------------GCGGGCUCGUCCAGCGGCUGCGGCGGCAGCAGCAGCUGCCAGCUGAUUGACCUGCUUCUGCAGCAGUUG-CUGCUUCAGGGCGGCCACCCCAC ------------------------...(((.(((((.((((((((.((....)).))))))))((((.(((((..((((....))))))))))-))).....))))))))....... ( -45.90, z-score = -0.62, R) >droSec1.super_9 434983 92 + 3197100 ------------------------GCGGGCUCGUCCAGCGGCUGCGGCGGCAGCAGCAGCUGCCAGCUGAUUGACCUGCUUCUGCAGCAGUUG-CUGCUUCAGGGCGGCCACCCCAC ------------------------...(((.(((((.((((((((.((....)).))))))))((((.(((((..((((....))))))))))-))).....))))))))....... ( -45.90, z-score = -0.62, R) >droYak2.chr2R 9058047 92 - 21139217 ------------------------ACGGGCUCGUCCAGCGGCGGCGGCGGCUGCAGCAGCUGCCAGUUGAUUGACCUGCUUUUGCAGCAGUUG-CUGCUUCAGGGCGGCCACCCCAC ------------------------...(((.((((((((((((((((((((((...))))))))...........((((....))))..))))-)))))...))))))))....... ( -46.80, z-score = -1.74, R) >droAna3.scaffold_13266 4899224 92 + 19884421 ------------------------GCGAGCUCGUCCUGCGGCAGCUGCGGCUGCAGCGGCGGCCAGUUGGUUGACCUGCUUCUGGAGCAGUUG-CUGCUUGAGGGCUGCCACGCCGC ------------------------(((....)))...(((((.(((((....)))))((((((((((.((....)).))).((.((((((...-)))))).)))))))))..))))) ( -47.50, z-score = -0.58, R) >dp4.chr3 3579477 92 + 19779522 ------------------------GCGGGCUCGGCCAGCGGCGGCAGCGGCCGCGGCAGCAGCCAGCUGAUUGACCUGCUUCUGCAGCAGCUG-CUGCUUGAGGGCUGCGACUCCGC ------------------------((((((.(((((.((.(((((....))))).))((((((.(((((......((((....))))))))))-)))))....))))).).).)))) ( -51.10, z-score = -0.58, R) >droPer1.super_2 3768104 92 + 9036312 ------------------------GCGGGCUCGGCCAGCGGCGGCAGCGGCCGCGGCUGCAGCCAGCUGAUUGACCUGCUUCUGCAGCAGCUG-CUGCUUGAGGGCUGCGACUCCGC ------------------------((((((.((((((((.(((((....))))).)))(((((.(((((......((((....))))))))))-)))).....))))).).).)))) ( -51.00, z-score = -0.58, R) >droWil1.scaffold_180701 3795557 92 - 3904529 ------------------------ACGGGCACGACCAGCGGCAGCAGCAGCUGCUGCAGCAGCCAGCUGGUUGACCUGUUUCUGUAGUAAUUG-CUGCUUAAGGGCAGCGACUCCAC ------------------------(((((..(((((((((((.(((((....)))))....))).)))))))).)))))...........(((-(((((....))))))))...... ( -42.60, z-score = -2.11, R) >droVir3.scaffold_12875 14282593 116 + 20611582 GCUGCCACGCGCAAUGGCACGCUCGGCGGCGCGACCUGCGGCGGCUGCUGCGGCCGCUACUGCCAGCUGAUUUACCUGUUUCUGCAGCAGUUG-CUGCUUUAAGGCAGCGACACCUC ((((((.(((((....((.(....))).)))))....((((((((((((((((..((....))(((.........)))...))))))))))))-)))).....))))))........ ( -54.40, z-score = -1.37, R) >droMoj3.scaffold_6496 9729662 116 + 26866924 GCUGCCCCGUGCCAUGGCACGCUCGGCUGCUCGGCCGGCGGCUGCGGCAGCGGCUGCUGCUGCCAGCUGAUUGACCUGCUUCUGCAGCAGUUG-UUGCUUCAAGGCAGCCACGCCCC ((((((((((((....))))((.(((((....))))))))).((.(((((((((((((((....(((.(......).)))...))))))))))-))))).)).))))))........ ( -61.80, z-score = -1.59, R) >droGri2.scaffold_15245 14254744 116 + 18325388 GCUGCCGCGCACAAUUGAACGUUCCGCGGCCCGUCCAGCGGCAGCAGCAGCAGCCGCCGCUGCCAGCUGAUUGACCUGCUUCUGCAACAGUUG-CUGCUUCAAGGCAGCGACGCCGC ...((((((.((........))..)))))).......(((((..((((.(((((....)))))..)))).......(((....)))...((((-(((((....)))))))))))))) ( -51.10, z-score = -1.02, R) >anoGam1.chr3L 34979597 74 + 41284009 -----------------------------UUCAAGCCGUU-CGGUAGCAGGUUCUGGU-CGCUCAGGAGAUUGAUCUGCUGCUGCAGCGCCUG-CUUCUUCAGCAU----------- -----------------------------....((.((((-((((((((((((..(((-(........)))))))))))))))).)))).))(-((.....)))..----------- ( -26.00, z-score = -0.58, R) >apiMel3.Group10 7120821 79 - 11440700 -----------------------------UCUGACCUAAUUGGGAUGCACUGGCCGAGUGUUGUAUCUUAUU--CUUAUUAACGUCGUCUUCGGCAGCCUUGAAAUUCAC------- -----------------------------.............((((.....(((.(((((........))))--)........((((....)))).))).....))))..------- ( -14.00, z-score = 0.57, R) >consensus ________________________GCGGGCUCGUCCAGCGGCGGCAGCGGCAGCAGCAGCUGCCAGCUGAUUGACCUGCUUCUGCAGCAGUUG_CUGCUUCAGGGCAGCCACUCCAC .....................................((.(((((....))))).)).(((((((((.(((((..((((....)))))))))....)))....))))))........ (-20.35 = -20.63 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:40:16 2011