| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,516,289 – 3,516,389 |
| Length | 100 |
| Max. P | 0.825400 |
| Location | 3,516,289 – 3,516,389 |
|---|---|
| Length | 100 |
| Sequences | 13 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 66.43 |
| Shannon entropy | 0.75887 |
| G+C content | 0.45292 |
| Mean single sequence MFE | -25.09 |
| Consensus MFE | -10.77 |
| Energy contribution | -10.35 |
| Covariance contribution | -0.42 |
| Combinations/Pair | 1.56 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.825400 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3516289 100 + 23011544 --AACCAUGCCUUAGCUUAACAUUGCU--CCUUCUUGCGA-ACAGAGCAAGUUCUGUAGUCUAGUCGGCAAGCCGGAGGAUCGCUACAAUGUACCCACCGGCUUU --.....((((...(((..((.((((.--.......))))-((((((....)))))).))..))).))))((((((.((...((......))..)).)))))).. ( -30.90, z-score = -2.06, R) >droSim1.chr2L 3469654 100 + 22036055 --AACAAUGCCUUAACUUAACAUUGCU--CCUUCCUGCGA-ACAGAGCAAGUUCUGUAGUCUAGUCGGCAAGCCGGAGGAUCGCUACAAUGUGCCCACCGGCUUC --.....((((...(((..((.((((.--.......))))-((((((....)))))).))..))).))))((((((.((..(((......))).)).)))))).. ( -32.80, z-score = -2.73, R) >droSec1.super_5 1618609 100 + 5866729 --AACAAUGCCUUAACUUAACUUUGCU--CCUUCCUGCGA-ACAGAGCAAGUUCUGUAGUCUAGUCGGCAAGCCGGAGGAUCGCUACAAUGUGCCCACCGGCUUU --.....((((...(((..(((((((.--.......))))-((((((....)))))))))..))).))))((((((.((..(((......))).)).)))))).. ( -32.70, z-score = -2.58, R) >droYak2.chr2L 3504765 102 + 22324452 --AACCAUGCCUUAAUUUAACAUUACAAACUUUUUUGCAA-ACAGAGAAAGUUCUGUAGUCUAGUCGGCAAGCCGGAGGAUCGCUACAAUGUGCCCACCGGCUUU --.....((((...(((....(((((((((((((((....-...))))))))).))))))..))).))))((((((.((..(((......))).)).)))))).. ( -29.70, z-score = -2.82, R) >droEre2.scaffold_4929 3551388 100 + 26641161 --UACCAUGCCCUAAUUUAACAAUACG--CCUCUUUGCGA-ACAGAGCAAGUUCUGUAGUCUAGUCGGCAAGCCGGAGGAUCGCUACAAUGUGCCCACCGGCUUU --.....((((...(((..((....((--(......))).-((((((....)))))).))..))).))))((((((.((..(((......))).)).)))))).. ( -30.20, z-score = -2.10, R) >droAna3.scaffold_12916 5562843 101 + 16180835 ----UCAUCCUAAAAUCCGAGUCUAAUAAAACACCUCCUUUUCAGAGCAAAUUCUGUAGUCUAGUUGGAAAGCCGGAGGAUCGUUACAACGUUCCCAACGGCUUU ----...........((((((.(((.........(((.......))).........))).))...))))((((((..(((.(((....))).)))...)))))). ( -21.37, z-score = -1.11, R) >dp4.chr4_group3 6460893 102 - 11692001 ---UCCCAAUUUGAAUUCGAUUCCAAACACUUGUUGCCAUUGCAGAGCAAAUUCUGUAGUCUAGUCGGGAAGCCGGAGGAUCGCUACAAUGUGCCCAACGGCUUC ---.............((((((...(((....)))...(((((((((....)))))))))..))))))(((((((..((..(((......))).))..))))))) ( -27.30, z-score = -0.93, R) >droPer1.super_1 3560181 102 - 10282868 ---UCCCAAUUUGAAUUCGAUUCCAAACACUUGUUGCCAUUGCAGAGCAAAUUCUGUAGUCUAGUCGGGAAGCCGGAGGAUCGCUACAAUGUGCCCAACGGCUUC ---.............((((((...(((....)))...(((((((((....)))))))))..))))))(((((((..((..(((......))).))..))))))) ( -27.30, z-score = -0.93, R) >droWil1.scaffold_180708 8994356 99 + 12563649 --AUUGAGAAAUAUAUGUAACUUAUCCUAAUU----UUAUUGCAGAGCAAAUUUUGUAGUCUAGUCGCUAAGCCUGAGGAUCGUUAUAAUGUUCCAAGCGGUUUU --.(((.(((.(((.((((((..(((((....----..(((((((((....))))))))).(((.(.....).)))))))).)))))))))))))))........ ( -16.00, z-score = 0.41, R) >droMoj3.scaffold_6500 14112239 102 - 32352404 --AGCGGAAAUCAGUUUAAACCUCUUCAUUUU-CGUUUUUUGCAGAGCAAGUUUUGUAGUUUAGUUUCCAAACCGGAGGAUCGCUAUAAUGUUCCCAGUGGUUUU --(((((((((.((.........))..)))))-))))..(..(.(((((....(((((((....(((((.....)))))...))))))))))))...)..).... ( -18.00, z-score = 0.02, R) >droVir3.scaffold_12963 4943788 103 - 20206255 --UACAAAGAGCGCUAGAAGUUUUAAGUUUUGACUUCUUUUGCAGACCAAGUUUUGUAGUUUAGUUGCCAAGCCGGAGGAUCGCUACAAUGUGCCCAGCGGCUUU --......(.((((((((((((.........))))))..(((((((......)))))))..))).))))((((((..((..(((......))).))..)))))). ( -24.70, z-score = 0.05, R) >droGri2.scaffold_15126 4148382 103 + 8399593 -GAAUAUGACCCGUACUUAGUCUAGCCUUUUG-CUCUCUUUGCAGACCAAGUUUUGUAGUUUAGUUGCCAAGCCAGAGGAUCGCUAUAAUGUGCCCAGUGGUUUU -......(((((((((.((((....(((((.(-((((..(((((((......)))))))...))......))).)))))...))))....))))...).)))).. ( -18.40, z-score = 1.06, R) >anoGam1.chr3R 48245516 102 + 53272125 ACGCGCGCAUUCGAUAGCUGUAACACUUUCUUUUUUUCCCCGCAGAACAAAUUCUGUUGUCUAGUCAGCAAGGCCGAUGAGAAGUACGGUAUUCCCG--GGUUU- ..((.((.....((..((((((.......((((((.((...((((((....)))))).((((.(....).)))).)).))))))))))))..)).))--.))..- ( -16.81, z-score = 2.13, R) >consensus __AACCAUACCUGAAUUUAACUUUACU_ACUUUCUUGCAUUGCAGAGCAAGUUCUGUAGUCUAGUCGGCAAGCCGGAGGAUCGCUACAAUGUGCCCACCGGCUUU .........................................((((((....))))))............((((((..((...((......))..))..)))))). (-10.77 = -10.35 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:02 2011