| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,083,844 – 17,083,955 |
| Length | 111 |
| Max. P | 0.869869 |
| Location | 17,083,844 – 17,083,955 |
|---|---|
| Length | 111 |
| Sequences | 8 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 72.82 |
| Shannon entropy | 0.53582 |
| G+C content | 0.41959 |
| Mean single sequence MFE | -29.12 |
| Consensus MFE | -12.42 |
| Energy contribution | -12.79 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.869869 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17083844 111 + 21146708 CUUAAUUCCGCCACUUGGACGGGCUCAAAGUGAUUUGCCAAU--AUGGAUGGAUAU-CUACGACGUCGUUCAUCAUUCAUUGGUAAGCAAGCGUUUGAGCUUCGUGUAAAUAGA .......(((((....)).)))(((((((((..(((((((((--...(((((((..-(......)..)))))))....)))))))))...)).))))))).............. ( -32.20, z-score = -1.81, R) >droSim1.chr2R 15734336 109 + 19596830 CUUAAUUCCGCCACUUGGACGGGCUCAAAGUGAUUUGCCAAU--AUGGAUGGAUAG-CGACACCGUCGUUCAUCAUUCAUUGGCAUU--GGCGUUUGAGCUUCGUGUAAAUAGA .......(((((....)).)))(((((((((.(..(((((((--...((((((..(-((....)))..))))))....))))))).)--.)).))))))).............. ( -37.60, z-score = -2.91, R) >droSec1.super_9 410215 109 + 3197100 CUUAAUUCCGCCACUUGGACGGGCUCAAAGUGAUUUGCCAAU--AUGGAUGGAUAG-CGACACCGUCGUUCAUCAUUCAUUGGCAUU--GGCGUUUGAGCUUCGUGUAAAUAGA .......(((((....)).)))(((((((((.(..(((((((--...((((((..(-((....)))..))))))....))))))).)--.)).))))))).............. ( -37.60, z-score = -2.91, R) >droYak2.chr2R 9026802 107 - 21139217 CUUAAUUCCGCCACUUGGACGGGCUCAAAGUGAUUUGCCAAU--AUGGAUGGAUAU-CUACGCUGUCGUUCAUCAUUCAUUGGCA----AGCUUUUGAGUUUCGUGUAAAUAGA .......(((((....)).)))((((((((.(.(((((((((--...(((((((..-(......)..)))))))....)))))))----))))))))))).............. ( -32.10, z-score = -2.40, R) >droEre2.scaffold_4845 11226540 107 + 22589142 CUUCAUUCCGCCACUUGGACGGGCUCAAAGUGAUUUGCCAAU--AUGAAUGGAUAU-CUACGCUGUCGUUCAUCAUUCAUUGGCA----AGCAUUUGAGUUUCGUGUAAAUAGA .......(((((....)).)))(((((((.((.(((((((((--((((.(((((..-(......)..)))))))))..)))))))----))))))))))).............. ( -30.50, z-score = -1.93, R) >droAna3.scaffold_13266 4857125 89 + 19884421 CUUACUUCUGCCACUUCGAUGGGCUUCAAGUGAUUUGCCAAUUUAUGGAUGGAUUU-CGAAAC-GUCGUUCAUCAUUCGCUGGUAAAUAGA----------------------- ..(((((..(((.(......))))...)))))((((((((.......(((((((..-((...)-)..)))))))......))))))))...----------------------- ( -22.12, z-score = -1.28, R) >dp4.chr3 3553715 96 + 19779522 CUUACUUCUGCCACUUGG------------UGAUUUGCCAAU--AUAAAUGGAUGGAUAACAUGGUCAUUCAUCAUUUAUUGGCCUG-AACAAACUGAACUUCAAGUGAAG--- ...........(((((((------------.(....((((((--(......(((((((.((...)).)))))))...)))))))...-..(.....)..).)))))))...--- ( -20.40, z-score = -0.98, R) >droPer1.super_2 3742446 96 + 9036312 CUUACUUCUGCCACUUGG------------UGAUUUGCCAAU--AUAAAUGGAUGGAUAACAUGGUCAUUCAUCAUUUAUUGGCCUG-AACAAACUGAACUUCAAGUGAAG--- ...........(((((((------------.(....((((((--(......(((((((.((...)).)))))))...)))))))...-..(.....)..).)))))))...--- ( -20.40, z-score = -0.98, R) >consensus CUUAAUUCCGCCACUUGGACGGGCUCAAAGUGAUUUGCCAAU__AUGGAUGGAUAG_CGACACCGUCGUUCAUCAUUCAUUGGCAUG__AGCAUUUGAGCUUCGUGUAAAUAGA .......(((((....)).)))..............((((((..((((((((.............)))))))).....)))))).............................. (-12.42 = -12.79 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:40:08 2011