| Sequence ID | dm3.chr2L |
|---|---|
| Location | 392,474 – 392,572 |
| Length | 98 |
| Max. P | 0.995910 |
| Location | 392,474 – 392,572 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 96.22 |
| Shannon entropy | 0.07143 |
| G+C content | 0.48372 |
| Mean single sequence MFE | -31.41 |
| Consensus MFE | -29.96 |
| Energy contribution | -29.64 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.08 |
| Mean z-score | -3.16 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.86 |
| SVM RNA-class probability | 0.995910 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 392474 98 + 23011544 AUCAGACGCGUCAGUCACUUACUCACUAACUAACAUUGCGGCUCGAACUAACUAAAUGGCCAACUGGGCGAGUGAGUGAGCUGACCAUAUGCGAUCAC ....(((((((..((((((((((((((......((((..((..........)).))))(((.....))).)))))))))).))))...))))).)).. ( -31.60, z-score = -3.11, R) >droSim1.chr2L 398993 98 + 22036055 AUCAGACGCGUCAGUCACUUACUCACUAACUAACUUUGCGGCUCUAACUAACUAAAUGGCCAACUGGGCGAGUGAGUGAGCUGACCAUAUGCGAUCAC ....(((((((..((((((((((((((..((........((((..............)))).....))..)))))))))).))))...))))).)).. ( -30.26, z-score = -2.95, R) >droSec1.super_14 376022 98 + 2068291 AUCAGACGCGUCAGUCACUUACUCACUAACUAACUUUGCGGCUCUAACUAUCUAAAUGGCCAACUGGGCGAGUGAGUGAGCUGACCAUAUGCGAUCAC ....(((((((..((((((((((((((..((........((((..............)))).....))..)))))))))).))))...))))).)).. ( -30.26, z-score = -2.79, R) >droYak2.chr2L 376285 96 + 22324452 AUCAGACGCGUCAGUCACUUGCUCACUAACUAAC-UUGCGGCUCCAACCAACUAAAUGGCCAACU-GGCGAGUGAGUGAGCUGACCAUAUGCGAUCAC ....(((((((..((((((..((((((.......-....((......)).........(((....-))).))))))..)).))))...))))).)).. ( -31.90, z-score = -3.08, R) >droEre2.scaffold_4929 443336 98 + 26641161 AUCAGACGCGUCAGUCACUUACUCACUAACUAACUUUGUGGCUCUAACUAACUAAAUGGCCAACUAGGCGAGUGAGUGAGCUGACCAUAUGCGAUCAC ....(((((((..((((((((((((((......((...(((((..............)))))...))...)))))))))).))))...))))).)).. ( -33.04, z-score = -3.89, R) >consensus AUCAGACGCGUCAGUCACUUACUCACUAACUAACUUUGCGGCUCUAACUAACUAAAUGGCCAACUGGGCGAGUGAGUGAGCUGACCAUAUGCGAUCAC ....(((((((..((((((((((((((............((......)).........(((.....))).)))))))))).))))...))))).)).. (-29.96 = -29.64 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:05:42 2011