| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,025,832 – 17,025,929 |
| Length | 97 |
| Max. P | 0.777514 |
| Location | 17,025,832 – 17,025,929 |
|---|---|
| Length | 97 |
| Sequences | 7 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 76.63 |
| Shannon entropy | 0.45764 |
| G+C content | 0.57116 |
| Mean single sequence MFE | -35.67 |
| Consensus MFE | -22.44 |
| Energy contribution | -22.54 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.777514 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17025832 97 + 21146708 UGAACUGAUUAUGCACCGACAUCUGGCUGUUUAGCGAGGAGGUGCCACUCAACGAGGCAACAUCCUCGCGUGAAGCUGAAUUUCCAAUCACUGCUGA--------- .................((.((..((((.....(((((((..((((.(.....).))))...)))))))....))))..)).)).............--------- ( -27.00, z-score = -0.65, R) >droVir3.scaffold_12875 9674193 94 - 20611582 UAUACUGAUGUUGGCCAGAAACUUGGCUGUUCAGCGAGGAGGUGCCGCCCAGGGAGGCGACAUCUUCGCGCGAGGCGUGCAGCGAUGCGGACGU------------ ............((((((....))))))((((.(((.(((((((.((((......)))).))))))).)))...((((......))))))))..------------ ( -36.10, z-score = -0.56, R) >droAna3.scaffold_13266 12950875 97 - 19884421 CAAACUGAUUACGCACCGACAUCUGACUGUUUAGCGAGGAAGUGCCACUCAGCGAGGUCACAUCCUCGCGGGAGGCGGCGGCUGUCCCAGCUGGCUG--------- ...(((..((.(((...((((......))))..)))))..)))(((.(((.((((((......))))))))).)))(.((((((...)))))).)..--------- ( -35.70, z-score = -0.81, R) >droEre2.scaffold_4845 11170211 103 + 22589142 UGAACUGAUUGUGCACCGACAUCUGGCUGUUCAGCGAGGAGGUGCCACUCAACGAGGCGACAUCCUCGCGUGAGGCUGAAUUCCCGACCGCUGAUG---CGGAUAC ......(((.((......)))))(((..((((((((((((..((((.(.....).))))...))))).(....))))))))..))).((((....)---))).... ( -36.40, z-score = -1.33, R) >droYak2.chr2R 8970606 103 - 21139217 UGAACUGAUUAUGCACCGACAUCUGGCUGUUUAGCGAGGAGGUGCCACUCAACGAGGCGACAUCCUCGCGUAAGGCUGAAUUCCCAACCGCUGAUG---CGGAUAC ...............(((.((((.(((......(((((((..((((.(.....).))))...)))))))....((.((......)).)))))))))---))).... ( -34.70, z-score = -2.08, R) >droSec1.super_9 354538 106 + 3197100 UGAACUGAUUAUGCACCGACAUCUGGCUGUUCAGCGAGGAGGUGCCACUCAAGGAGGCGACAUCCUCGCGCGAGGCUGAAUUCCCAAUCGCUGCUGAGGCGGAUAC ....(((.(((.(((.(((....(((..((((((((((((..((((.(.....).))))...))))).(....))))))))..))).))).))))))..))).... ( -38.00, z-score = -1.16, R) >droSim1.chr2R 15683391 106 + 19596830 UGAACUGAUUAUGCACCGACAUCUGGCUGUUCAGCGAGGAUGUGCCACUCAAGGAGGCGACAUCCUCGCGCGAGGCUGAAUUCCCAAUCGCUGCUGAGGCGGAUAC ....(((.(((.(((.(((....(((..((((((((((((((((((.(.....).))).)))))))).(....))))))))..))).))).))))))..))).... ( -41.80, z-score = -2.54, R) >consensus UGAACUGAUUAUGCACCGACAUCUGGCUGUUCAGCGAGGAGGUGCCACUCAACGAGGCGACAUCCUCGCGCGAGGCUGAAUUCCCAACCGCUGCUG___CGGAUAC ........................((((.....(((((((..((((.(.....).))))...)))))))....))))............................. (-22.44 = -22.54 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:57 2011