| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,021,088 – 17,021,181 |
| Length | 93 |
| Max. P | 0.822686 |
| Location | 17,021,088 – 17,021,181 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 90.31 |
| Shannon entropy | 0.16629 |
| G+C content | 0.40795 |
| Mean single sequence MFE | -21.09 |
| Consensus MFE | -17.25 |
| Energy contribution | -16.93 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.822686 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17021088 93 - 21146708 UACAUAUGUAUAACUGGGUUGGAGCAUGCACCUCGAAAGGGGUUAACGACGCAUGGUCUAAAAAAAAAAGUCUAACGACAACUUUACAUUCAC .....(((((........(((((.((((((((((....))))).......))))).)))))........(((....))).....))))).... ( -26.71, z-score = -4.33, R) >droSim1.chr2R 15678439 92 - 19596830 UACAUAUGUAUAUCUGGGUUGGAGCAUGCACCUCAAAAGGGGUUAACGACGCAUGGUCU-AAAAAAAACGUCUAACGUCAACUUUACAUCCAC .....(((((.....((((((((.((((((((((....))))).......))))).)).-.......(((.....)))))))))))))).... ( -20.11, z-score = -1.44, R) >droSec1.super_9 349946 91 - 3197100 UACAUAUGUAUAUCUGGGUUGGAGCAUGCACCUCUAAAGGGGUUAACGACGCAUGGUCU--AAAAAAACGUCUAACGUCAACUUUACAUCCAC .....(((((.....((((((((.((((((((((....))))).......))))).)).--......(((.....)))))))))))))).... ( -20.31, z-score = -1.40, R) >droYak2.chr2R 8965746 87 + 21139217 ---UUAUAUAUAUCUGGGUUGGAGCAUGCACCUCCAAAGGGGUUAACGACGCAUGGUCU---AAAAAAAGUCUAACGUCAACUUUACAUCUAU ---...........(((((((((.((((((((((....))))).......))))).)))---)...((((((....)...)))))..))))). ( -17.31, z-score = -0.92, R) >droEre2.scaffold_4845 11165345 88 - 22589142 ---UUAUAUAUAUCUGGGCUGGAGCAUGCACCUCCAAAGGGGUUAACGACGCAUGGUCU--AAAAAAAAGUCUAACGUCAACGUUACAUCCAU ---...........((((.((((.((((((((((....))))).......))))).)))--)..........(((((....)))))..)))). ( -21.01, z-score = -1.74, R) >consensus UACAUAUGUAUAUCUGGGUUGGAGCAUGCACCUCCAAAGGGGUUAACGACGCAUGGUCU__AAAAAAAAGUCUAACGUCAACUUUACAUCCAC ..............((((.((((.((((((((((....))))).......))))).))...........(.(....).).......)))))). (-17.25 = -16.93 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:55 2011