| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,020,514 – 17,020,606 |
| Length | 92 |
| Max. P | 0.571772 |
| Location | 17,020,514 – 17,020,606 |
|---|---|
| Length | 92 |
| Sequences | 8 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 66.51 |
| Shannon entropy | 0.64109 |
| G+C content | 0.47028 |
| Mean single sequence MFE | -25.99 |
| Consensus MFE | -8.68 |
| Energy contribution | -8.71 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.571772 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17020514 92 - 21146708 CAAAAGACCACACC-AACUAUUUUCGGCUGGCUGAGCAUCAAAACUUCACCAGCUCAAAAUGCCACCUGUAAAAGG---------------GGUUCAUUGAACGAUUU (((..((((.....-...((((((.((((((.((((.........)))))))))).))))))...(((.....)))---------------))))..)))........ ( -22.20, z-score = -1.95, R) >droSim1.chr2R 15677308 93 - 19596830 CAAAAGACCACACC-AACUAUUUUCGGCUGGCUGAGCAUC--AACUUCACCAGCUCAAAAUGCCACCUGUAAAAGGA------------GGGGUUCAUUGAACGAUUU (((..((((.....-...((((((.((((((.((((....--...)))))))))).))))))((.(((.....))).------------))))))..)))........ ( -25.30, z-score = -2.27, R) >droSec1.super_9 349345 93 - 3197100 CAAAAGACCACACC-AACUAUUUUCGGCUGGCUGAGCAUC--AACUUCACCAGCUCAAAAUGCCACCUGUAAAAGGA------------GGGGUUCAUUGAACGAUUU (((..((((.....-...((((((.((((((.((((....--...)))))))))).))))))((.(((.....))).------------))))))..)))........ ( -25.30, z-score = -2.27, R) >droYak2.chr2R 8965125 105 + 21139217 CAAAAGACCACACC-AACUAUUUUCGGCUGGUUGAGCAUC--AACUCCAUCAGCUAGGCGACUCGUUUCGACCAAAUGCCACCUGCAAAGGGGUUCAUUGAACGAUUU ..............-........(((.((((((((.....--.......)))))))).))).(((((.(((......(((.(((....))))))...))))))))... ( -25.60, z-score = -1.05, R) >droEre2.scaffold_4845 11164730 105 - 22589142 CAAAAGACCACACC-AACUAUUUUCGGCUGGCUGAGCAUC--AACUCCACCAGCUCGGCGACUCGUUUCGUCAAAAUGCCACCUGCAAAGGGGUUCAUUGAACGAUUU (((..((((.....-..........(((..(((((((...--..........)))))))(((.......))).....))).(((....)))))))..)))........ ( -27.32, z-score = -1.42, R) >droAna3.scaffold_13266 12945744 89 + 19884421 CAAAAGACUCCACCAAACUAUUCUCGGCUGGCUGAGCAUC--AGCUCCACUGG--CAAGGUG---ACUCUCCGGAGU------------CAGGUUCAUUGAACGUUUU .....((((((...............((..(..((((...--.))))..)..)--).((...---.))....)))))------------)..((((...))))..... ( -26.90, z-score = -1.53, R) >dp4.chr3 17657148 90 - 19779522 GGGGAGGCUUCAACAAACUAUUUUCGGGUGGCUGGGCAAU-CAGCUCUG--------UUUCCCCAAUUGCAACCUGCAUU---------UGGGUUCAAUGAACGAUUU ((((((((.....((..(.......)..))(((((....)-))))...)--------))))))).((((.(((((.....---------.)))))))))......... ( -27.30, z-score = -1.16, R) >droPer1.super_31 802166 98 + 935084 GGGGAGGCUUCAACAAACUAUUUUCGGGUGGCUGGGCAAU-CAGCUCUGUGACUCUUUUUCCCCAAUUGCAACCUGCAUU---------UGGGUUCAAUGAACGAUUU ((((((.......)...........((((.((.((((...-..)))).)).))))....))))).((((.(((((.....---------.)))))))))......... ( -28.00, z-score = -0.96, R) >consensus CAAAAGACCACACC_AACUAUUUUCGGCUGGCUGAGCAUC__AACUCCACCAGCUCAAAAUCCCAACUGUAAAAAGU____________GGGGUUCAUUGAACGAUUU .........................((((((..(((........)))..)))))).....................................((((...))))..... ( -8.68 = -8.71 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:53 2011