| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,000,710 – 17,000,813 |
| Length | 103 |
| Max. P | 0.887872 |
| Location | 17,000,710 – 17,000,813 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 58.12 |
| Shannon entropy | 0.75420 |
| G+C content | 0.32925 |
| Mean single sequence MFE | -14.68 |
| Consensus MFE | -6.60 |
| Energy contribution | -6.61 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.59 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.887872 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17000710 103 + 21146708 ------------AUUUUUAUUCGCAUUUUUGUAAGCACA-ACGCAAGCAUCACUUGAGUACAUACAUUCGGUGUGGAAAUAUGAUUUUAGAUAU-UUCAUUUCCAACCCACCAGAGA ------------.....((((((......(((..((...-..))..))).....))))))......((((((((((((((..(((.......))-)..)))))))...)))).))). ( -17.60, z-score = -1.14, R) >droSim1.chr2R 15657718 82 + 19596830 ---------------------------------AUUUUU-AUGCAGGCAUCACUUGAGUACACAUUUUCGGUGUGGAAAUAUGAUUUUAGAUAU-UUUAUAUCUAUUCCUCCAGAGA ---------------------------------......-.........((.((.(((..(((((.....))))).......((...(((((((-...))))))).))))).)).)) ( -11.80, z-score = 0.38, R) >droSec1.super_9 330092 82 + 3197100 ---------------------------------AUUUUU-AUGCAGGCAUCACUUGAGUACACACAUUCGGUGUGGAAAUAUGAUUUUAGAUAU-UUUAUUUCUAUCCCUAGAGAAA ---------------------------------.....(-((.((((.....)))).)))(((((.....)))))(((((((........))))-))).((((((....)))))).. ( -13.60, z-score = -0.42, R) >droYak2.chr2R 8945168 114 - 21139217 AUUUUUAUUCCCAUAUUUAUUCGCAUUUUUCUACUCACA-GCGUGAGCAUCACUUGAGUACACACAUUCGGUUUAGAAAUAUGACUUUAGAUAU-UUUAUUU-UAGCCCUCAAGAGA ............(((((((....(((.((((((..(...-((....))......(((((......))))))..)))))).)))....)))))))-.......-.............. ( -17.10, z-score = -1.45, R) >droEre2.scaffold_4845 11144882 110 + 22589142 ------ACUUUUAUUCCCAUAUUUAUUCGCAUUUUUGUACGCACAAGCAUCACUUGAGCACACACACACGCAGUAGAAAUAUGAUUUUAGAUAU-UUUAUUUCUAUCCCUGCACAGA ------...........................(((((..((.((((.....)))).))..........((((((((((((.(((.......))-).))))))))...))))))))) ( -18.90, z-score = -3.29, R) >droAna3.scaffold_13266 12925943 87 - 19884421 ----------------GUUUUUUUAUUCCCAUUUUCCAAAACAAAGGAUGCACUUUUGCACACACGU--GGUUUAGAA-UAUGAUUUUUCGCACGUUUUUUUCUAU----------- ----------------..................(((........)))((((....))))...((((--(.....(((-........))).)))))..........----------- ( -9.10, z-score = 0.36, R) >consensus _________________UAUU___AUU____U_AUCAUA_ACGCAAGCAUCACUUGAGUACACACAUUCGGUGUAGAAAUAUGAUUUUAGAUAU_UUUAUUUCUAUCCCUCCAGAGA ........................................((.((((.....)))).))..........((.(((((((((................))))))))).))........ ( -6.60 = -6.61 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:52 2011