| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,933,256 – 16,933,311 |
| Length | 55 |
| Max. P | 0.772410 |
| Location | 16,933,256 – 16,933,311 |
|---|---|
| Length | 55 |
| Sequences | 4 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 77.60 |
| Shannon entropy | 0.36689 |
| G+C content | 0.43761 |
| Mean single sequence MFE | -17.62 |
| Consensus MFE | -11.44 |
| Energy contribution | -12.00 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.772410 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16933256 55 + 21146708 --------UUUUGCAGC--UAAAAUCCAAUCGAUUAGAUUGGCAGCAAUUGAUAGUUGGCCUUGG --------.....((((--((.(((((((((.....)))))).....)))..))))))....... ( -11.50, z-score = -0.37, R) >droSim1.chr2R 15591197 63 + 19596830 UUUGGUGGGGUGGCAGC--UAAAAUCCAAUCGAUUAGAUUGGCAGCAAUUGAUAGUUGACCUUGG ......(((((..((((--((.(((((((((.....)))))).....)))..))))))))))).. ( -15.20, z-score = -0.66, R) >droSec1.super_9 263425 63 + 3197100 UUUGGUGGGCUGGCAGC--UAAAAUCCAAUCGAUUAGAUUGGAAGCAAUUGAUAGUUGGCCUUGG ...(((.(((((.((((--(....(((((((.....))))))))))...)).))))).))).... ( -20.50, z-score = -2.50, R) >droAna3.scaffold_13266 12848813 65 - 19884421 CUUUGUGGGCUAGCUGCAGCAAAAACCAAUCGAUUAGAUUGGCUCUGACUGAUUGUUAGCCAUGG .......(((((((..(((((....((((((.....))))))...)).)))...))))))).... ( -23.30, z-score = -3.20, R) >consensus UUUGGUGGGCUGGCAGC__UAAAAUCCAAUCGAUUAGAUUGGCAGCAAUUGAUAGUUGGCCUUGG .......(((((((...........((((((.....))))))............))))))).... (-11.44 = -12.00 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:48 2011