Locus 4990

Sequence ID	dm3.chr2R
Location	16,926,948 – 16,927,068
Length	120
Max. P	0.736055

overview

Window 3

Location	16,926,948 – 16,927,068
Length	120
Sequences	3
Columns	122
Reading direction	forward
Mean pairwise identity	57.70
Shannon entropy	0.59380
G+C content	0.38336
Mean single sequence MFE	-21.96
Consensus MFE	-11.26
Energy contribution	-11.49
Covariance contribution	0.23
Combinations/Pair	1.38
Mean z-score	-1.02
Structure conservation index	0.51
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.54
SVM RNA-class probability	0.736055
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 16926948 120 + 21146708
AUCUUUUAUCUUUAAUAUAUGCAUCUCUUGUUAUCUGCA--AUUCCGUAGCAUUACCUCUAUAAAAUCAAAUUGGUCGGGCUAUAUAAAUGAUAUAUACCCCUCGCUGCCAUUUGUGCAGGG
.................................((((((--.....(((((...(((................))).(((.((((((.....)))))).)))..)))))......)))))). ( -23.59, z-score =  -1.43, R)
>droEre2.scaffold_4845 11071104 93 + 22589142
----------------------ACCUUCCAUUACCUCCAU-AAAAUGUAGCUUUG--UUUAGAACGUUUACAAGGU---GCGACGUAAGUGAAGUAUACCCCUCAUCGG-AUUGGUGCAGGG
----------------------..((((..((((.(((((-....(((((...((--(.....))).)))))..))---).)).))))..)))).....((((((((..-...)))).)))) ( -19.10, z-score =   0.28, R)
>droYak2.chr2R 8869786 114 - 21139217
---AUCUUUUAUAUCUGCAAUAUCUUUCCAUUACCUCUAUUAAAAUGUAGCUUUU--UUUAUAACUUUUACAAGGG---GCUACAUAAAUGAAGUAUACCCCUCACUGCCAUCGGUGCAGGG
---............................(((.((.(((...(((((((((((--(.((.......)).)))))---))))))).))))).)))...(((((((((....))))).)))) ( -23.20, z-score =  -1.92, R)
>consensus
____U_U_U__U___U__A___ACCUUCCAUUACCUCCAU_AAAAUGUAGCUUUA__UUUAUAACAUUUACAAGGU___GCUACAUAAAUGAAGUAUACCCCUCACUGCCAUUGGUGCAGGG
............................................(((((((............................))))))).............(((((((((....))))).)))) (-11.26 = -11.49 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:47 2011