| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,917,405 – 16,917,497 |
| Length | 92 |
| Max. P | 0.517078 |
| Location | 16,917,405 – 16,917,497 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 80.34 |
| Shannon entropy | 0.36560 |
| G+C content | 0.46899 |
| Mean single sequence MFE | -25.13 |
| Consensus MFE | -17.58 |
| Energy contribution | -18.55 |
| Covariance contribution | 0.97 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.517078 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16917405 92 - 21146708 ------CAAGUCUCCAAGUUCUUCGUUCUUCUCGUAUGAUGCAUGUGAGAGAAUGAAGAAAGCAAUGCGGCCGAGGUGGAGCUGGAAACUACAGUGGG ------..(((.(((...(((((((((((.((((((((...)))))))))))))))))))(((....(.((....)).).)))))).)))........ ( -29.60, z-score = -1.91, R) >droAna3.scaffold_13266 12834076 70 + 19884421 -------------------UCGCAAUUCUUCUCGUAUGAUGCAUGUGAAAGAAUGAAGAAAGAAA-------GGGGAGAAACCACAA--UACAGUGAG -------------------((((.((((((.(((((((...)))))))))))))...........-------.((......))....--....)))). ( -11.90, z-score = -0.56, R) >droYak2.chr2R 8860040 96 + 21139217 CAAGUCCAAG--UCCAAGCUCUUCGUUCUUCUCGUAUGAUGCAUGUGAGAGAACGAAGAAAGAUAUGCGAUCGAGGUGGAGCUGAAAACUACAGUGGG ....((((..--((.....((((((((((.((((((((...))))))))))))))))))..(((.....)))))..))))((((.......))))... ( -29.10, z-score = -1.85, R) >droEre2.scaffold_4845 11061572 90 - 22589142 ------CAAG--UCCAAGUUCUUCGUUCUUCUCGUAUGAUGCAUGUGAGAGACUGAGGAAAGCAAUGCGAUCGAGGUGGAGCUGAAAACUACAGUGGG ------....--((((..(((((((.(((.((((((((...))))))))))).))))))).((...))........))))((((.......))))... ( -21.00, z-score = 0.61, R) >droSec1.super_9 248068 92 - 3197100 ------CAAGUCUCCAAGUUCUUCGUUCUUCUCGUAUGAUGCAUGUGAGAGAAUGAAGAAAGCAAUGCGGUCGAGGGGGAGCUGCAAGCUACAGUGGG ------.......(((..(((((((((((.((((((((...)))))))))))))))))))(((..(((((((......)).))))).)))....))). ( -30.60, z-score = -1.94, R) >droSim1.chr2R 15572645 92 - 19596830 ------CAAGUCUCCAAGUUCUUCGUUCUUCUCGUAUGAUGCAUGUGAGAGAAUGAAGAAAGCAAUGCAGUCGAGGUGGAGCUGGAAGCUACAGUGGG ------..((..(((...(((((((((((.((((((((...)))))))))))))))))))(((..(((.......)))..))))))..))........ ( -28.60, z-score = -1.59, R) >consensus ______CAAG__UCCAAGUUCUUCGUUCUUCUCGUAUGAUGCAUGUGAGAGAAUGAAGAAAGCAAUGCGGUCGAGGUGGAGCUGAAAACUACAGUGGG .............((....((((((((((.((((((((...)))))))))))))))))).....................((((.......)))))). (-17.58 = -18.55 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:46 2011