| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,888,270 – 16,888,347 |
| Length | 77 |
| Max. P | 0.834606 |
| Location | 16,888,270 – 16,888,347 |
|---|---|
| Length | 77 |
| Sequences | 10 |
| Columns | 79 |
| Reading direction | forward |
| Mean pairwise identity | 62.71 |
| Shannon entropy | 0.78955 |
| G+C content | 0.42472 |
| Mean single sequence MFE | -20.79 |
| Consensus MFE | -5.19 |
| Energy contribution | -4.48 |
| Covariance contribution | -0.71 |
| Combinations/Pair | 2.42 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.25 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.834606 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16888270 77 + 21146708 ACCACAUUCCGUACUUUGUUGUU-UUCUCCGUG-GAAAUGGAAAUGGGCGGCUUGAAGCGGAAGUUGGUAAUUUAUUUU ((((..((((((.....((((((-(..(((((.-...)))))...))))))).....))))))..)))).......... ( -25.30, z-score = -3.02, R) >droPer1.super_31 656573 68 - 935084 ----------AUCUCCUCCCCCAAGUUUCUGCUUUCCAUGAAAAUGGGCGGCACAGGACGGAAGUUGGUAAUUUAUUU- ----------..........((((.((((((((.(((((....))))).))))......)))).))))..........- ( -17.60, z-score = -0.61, R) >dp4.chr3 17513137 68 + 19779522 ----------AUCUCCUCCCCCAAGUUUCUGCUUUCCAUGAAAAUGGGCGGCACAGGACGGAAGUUGGUAAUUUAUUU- ----------..........((((.((((((((.(((((....))))).))))......)))).))))..........- ( -17.60, z-score = -0.61, R) >droAna3.scaffold_13266 16191457 71 - 19884421 -------ACCGCAUUCCUCAGUAGUAUGUAGUUUGUUGUGGAAAUGGGCGGCUUGAAGCGGAAGUUGGUAAUUUAUUU- -------.((((.((((.((((((........)))))).))))....)))).....(((....)))............- ( -15.70, z-score = -0.36, R) >droEre2.scaffold_4845 11032233 77 + 22589142 ACCGCAUUCCGUACUUUGUUGUU-UUCUCCGUG-GAAAUGGAAAUGGGCGGCUUGAAGCGGAAGUUGGUAAUUUAUUUU ((((..((((((.....((((((-(..(((((.-...)))))...))))))).....))))))..)))).......... ( -24.60, z-score = -2.52, R) >droYak2.chr2R 8830637 77 - 21139217 ACCACAUUCCGGUUCUUGUUGUU-UUCUCCGUG-GAAAUGGAAAUGGGCGGCUUGAAGCGGAAGUUGGUAAUUUAUUUU ((((..(((((.(((..((((((-(..(((((.-...)))))...)))))))..))).)))))..)))).......... ( -30.00, z-score = -4.38, R) >droSec1.super_9 218964 77 + 3197100 GUCACAUUCCGUACUUUGUUGUU-UUCUCCGUG-GAAAUGGAAAUGGGCGGCUUGAAGCGGAAGUUGGUAAUUUAUUUU .(((..((((((.....((((((-(..(((((.-...)))))...))))))).....))))))..)))........... ( -21.40, z-score = -1.93, R) >droSim1.chr2R 15543412 77 + 19596830 AUCACAUUCCGUACUUUGUUGUU-UUCUCCGUG-GAAAUGGAAAUGGGCGGCUUGAAGCGGAAGUUGGUAAUUUAUUUU ((((..((((((.....((((((-(..(((((.-...)))))...))))))).....))))))..)))).......... ( -22.70, z-score = -2.47, R) >droGri2.scaffold_15245 11330355 61 - 18325388 --------------AUCAUCCUCAUUCGUUGUG-GUAACAAAUUGGGGCAAUCU--AGCGGAAGUUGGUCAUUUUUUU- --------------.....(((((....((((.-...))))..)))))....((--(((....)))))..........- ( -14.40, z-score = -2.11, R) >anoGam1.chr3R 8955533 77 - 53272125 ACGAUGUUCACUAGCCUGUUAGUUGCUGUCGUG--GAAUGAAAAAAGCUACCGGAGAGUGGAAGUUUGUAGUUUCGUUU (((((((..(((((....))))).)).))))).--((((((((.(((((.(((.....))).)))))....)))))))) ( -18.60, z-score = -1.03, R) >consensus A_CACAUUCCGUACUUUGUUGUU_UUCUCCGUG_GAAAUGGAAAUGGGCGGCUUGAAGCGGAAGUUGGUAAUUUAUUUU .................(((((......((((.....))))......)))))....(((....)))............. ( -5.19 = -4.48 + -0.71)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:44 2011