| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,844,123 – 16,844,213 |
| Length | 90 |
| Max. P | 0.564913 |
| Location | 16,844,123 – 16,844,213 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 83.16 |
| Shannon entropy | 0.35410 |
| G+C content | 0.42132 |
| Mean single sequence MFE | -21.17 |
| Consensus MFE | -15.09 |
| Energy contribution | -15.04 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.564913 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16844123 90 - 21146708 -------ACAGGACACAGGACAAUAAUUGGCAGCAAUUAUAGCAAGGAAAUCGUUGCUAAUUUACUACUCGCUCAACUGCACACAUUGUUGCAGAUU--------- -------.................((((.((((((((..((((((.(....).))))))...........((......))....)))))))).))))--------- ( -19.80, z-score = -1.80, R) >droSim1.chr2R 15498311 90 - 19596830 -------ACAGGACACAGGACAAUAAUUGGCAGCAAUUAUAGCAAGGAAAUCGUUGCUAAUUUACUACUCGCUCAACUGCACACAUUGUUGCAGAUU--------- -------.................((((.((((((((..((((((.(....).))))))...........((......))....)))))))).))))--------- ( -19.80, z-score = -1.80, R) >droSec1.super_9 175130 90 - 3197100 -------ACAGGACACAGGACAAUAAUUGGCAGCAAUUAUAGCAAGGAAAUCGUUGCUAAUUUACUACUCGCUCAACUGCACACAUUGUUGCAGAUC--------- -------......................((((((((..((((((.(....).))))))...........((......))....)))))))).....--------- ( -19.60, z-score = -1.67, R) >droYak2.chr2R 8785855 90 + 21139217 -------ACAGGACACAGGACAAUAAUUGGCAGCAAUUAUAGCAAGGAAAUCGUUGCUAAUUUACUACUCGCUCAACUGCACACAUUGUUGCAGAUU--------- -------.................((((.((((((((..((((((.(....).))))))...........((......))....)))))))).))))--------- ( -19.80, z-score = -1.80, R) >droEre2.scaffold_4845 10987385 97 - 22589142 ACAGGACACAGGACACAGGACAAUAAUUGGCAGCAAUUAUAGCAAGGAAAUCGUUGCUAAUUUACUACUCGCUCAACUGCACACAUUGUUGCAGAUU--------- ........................((((.((((((((..((((((.(....).))))))...........((......))....)))))))).))))--------- ( -19.80, z-score = -1.47, R) >droAna3.scaffold_13266 16144708 92 + 19884421 ------CACAGGACACAGGACAAUAAUUGGCAGCAAUUAUAGCAAGGAAAUCGUUGCUAAUUUAGUACUCGCUCAACUGCACCCAUUGUUGCCGAGUC-------- ------....................(((((((((((..((((((.(....).))))))...........((......))....)))))))))))...-------- ( -24.50, z-score = -2.10, R) >dp4.chr3 11474097 96 + 19779522 -CCCGGGACAGGACACAGGACAAUAAUUGGCAGCAAUUAUAGCAAGGAAAUCGUUGCUAAUUUACUACUCGCUCAACUGCACACAUUGUUGCAAAUG--------- -.((......)).................((((((((..((((((.(....).))))))...........((......))....)))))))).....--------- ( -21.10, z-score = -1.17, R) >droPer1.super_4 4975116 96 + 7162766 -CCCGGGACAGGACACAGGACAAUAAUUGGCAGCAAUUAUAGCAAGGAAAUCGUUGCUAAUUUACUACUCGCUCAACUGCACACAUUGUUGCAAAUG--------- -.((......)).................((((((((..((((((.(....).))))))...........((......))....)))))))).....--------- ( -21.10, z-score = -1.17, R) >droWil1.scaffold_181141 5178629 95 - 5303230 ----------AGACACAGGACAAUAAUUGGCAGCAAUUAUAGCAAGGAAAUCGUUGCUAAUUUACUACUCGCUCGGCUAAACACAUUGUUGUAAACUGCCUCAUC- ----------.((..(((.((((((((((..(((.....((((((.(....).))))))..........(....))))...)).))))))))...)))..))...- ( -20.90, z-score = -1.60, R) >droVir3.scaffold_12823 667024 98 + 2474545 --------ACAGACACAGGACAAUAAUUGGCAGCAAUUAUUGCAAGGAAAUCGUUGCUAAUUUACGACUCGCUCCGCUGCACGCAUUGUUGUUGCAACGAAGGAUG --------.((..(....(.(((((((((....)))))))))).......(((((((......(((((..((..........))...))))).))))))).)..)) ( -22.30, z-score = 0.02, R) >droMoj3.scaffold_6496 25766324 98 + 26866924 --------ACAGACAGAGGACAAUAAUUGGCAGCAAUUAUUGCAAGGAAAUCGUUGCUAAUUUGCAACUCGCUUCGAUGCACGCAUUGUUAUGCCAGCCAAGGAUG --------..............((..(((((.((((.....((((.(....).))))....)))).....((..(((((....)))))....))..)))))..)). ( -23.70, z-score = -0.34, R) >droGri2.scaffold_15245 16234316 92 - 18325388 --------ACAGACACAGGACAAUAAUUGGCAGCAAUUAUUGCGAGGAAAUCGUUGCUAAUUUACUACUCGCUCCGUUGCACGCAUUGUUGUUGCAAUUG------ --------.........(((.((((((((....))))))))(((((.((((........))))....))))))))((((((.(((....)))))))))..------ ( -21.60, z-score = -0.48, R) >consensus _______ACAGGACACAGGACAAUAAUUGGCAGCAAUUAUAGCAAGGAAAUCGUUGCUAAUUUACUACUCGCUCAACUGCACACAUUGUUGCAGAUU_________ .............................((((((((....((((.(....).)))).............((......))....)))))))).............. (-15.09 = -15.04 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:41 2011