| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,837,027 – 16,837,132 |
| Length | 105 |
| Max. P | 0.779512 |
| Location | 16,837,027 – 16,837,132 |
|---|---|
| Length | 105 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.34 |
| Shannon entropy | 0.48976 |
| G+C content | 0.41869 |
| Mean single sequence MFE | -28.61 |
| Consensus MFE | -12.35 |
| Energy contribution | -12.62 |
| Covariance contribution | 0.26 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.779512 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16837027 105 - 21146708 GCGGCGGGAAAUUGGCAGCAAUUUUCUUUGCACUCUUCGCAUUUCCU----------UGCGAUUAUAAUAAAUGCGAAUUUCCUCGGCCAUUUCCUCA-----GCAUUUGGCACGAAAAU .((.(((((((((.(((((((......)))).....(((((......----------)))))..........))).))))))).))((((........-----.....)))).))..... ( -31.42, z-score = -2.28, R) >droSim1.chr2R 15491473 105 - 19596830 GCGGCGGGAAAUUGGCAGCAAUUUUCUUUGCACUCUUCGCAUUUCCU----------UGCGAUUAUAAUAAAUGCGAAUUUCCUCGGCCAUUUCCUCA-----GCAGUUGGCACGAAAAU .((.(((((((((.(((((((......)))).....(((((......----------)))))..........))).))))))).))((((........-----.....)))).))..... ( -31.42, z-score = -2.00, R) >droSec1.super_9 168176 105 - 3197100 GCGGCGGGAAAUUGGCAGCAAUUUUCUUUGCACUCUUCGCAUUUCCU----------UGCGAUUAUAAUAAAUGCGAAUUUCCUCGGCCAUUUCCUCA-----GCCGUUGGCACGAAAAU (((((((((((((.(((((((......)))).....(((((......----------)))))..........))).)))))))).((......))...-----)))))............ ( -32.70, z-score = -2.25, R) >droYak2.chr2R 8778578 110 + 21139217 GCGGCGGGAAAUUGGCAGCAAUUUUCUUUGCACUCUUCGCAUUUCCU----------UGCGAUUAUAAUAAAUGCGAAUUUCCUCGGCCAUUUCCUCAGCUGUGCAACUGCUGCGAAUAU (((((((((((((.(((((((......)))).....(((((......----------)))))..........))).))))))))((((..........)))).......)))))...... ( -35.50, z-score = -2.73, R) >droEre2.scaffold_4845 10980099 109 - 22589142 GCGGCGGGAAAUUGGCAGCAAUUUUCUUUGCACUCUUCGCAUUUCCU----------UGCGUUUAUAAUAAAUGCGAAUUUCCUCGGCCAUUUCCUCAGCC-UGCAACGGCUGCGAAUAU ..(((((((((((.(((((((......))))......((((......----------))))...........))).))))))))..))).....(.(((((-......))))).)..... ( -36.10, z-score = -2.79, R) >droAna3.scaffold_13266 16136991 105 + 19884421 AUGGCGGGAAAUUGAAAGCAAUUUUCUUUGCACUUUUCGCAUUUCCC----------CGCGAUUAUAUUAAAUGUGAAUUUCCUCGGCCAUUUCCUAG-----GCAGAGGGCACAAAAAG ...((((((((((((((((((......))))...))))).)))).))----------)))............((((....(((((.(((........)-----)).)))))))))..... ( -31.50, z-score = -2.38, R) >dp4.chr3 11466749 105 + 19779522 CUGGCGGGAAAUUGAGAGCAAUUUUCUUUGCACUUUUCGCAUUUCCC----------CAUGAUUAUAAUAAAUGCGAAUUUCCUCGGCCAUUUCCUUG-----GCUUUUUUGAUGACGAC ....(((((((..(((.((((......)))).)))(((((((((...----------............)))))))))))))).))((((......))-----))............... ( -24.76, z-score = -1.24, R) >droPer1.super_4 4967623 105 + 7162766 CUGGCGGGAAAUUGAGAGCAAUUUUCUUUGCACUUUUCGCAUUUCCC----------CAUGAUUAUAAUAAAUGCGAAUUUCCUCGGCCAUUUCCUUG-----GCUUUUUUGAUGACGAU ....(((((((..(((.((((......)))).)))(((((((((...----------............)))))))))))))).))((((......))-----))............... ( -24.76, z-score = -0.96, R) >droWil1.scaffold_181141 5158289 86 - 5303230 GAGAUGGGAAAUUGACAGCAAUUUUCUUUGCACUUUUCCCAUUUCC-----------UAUUAUUAUAAUAAAUGCGAAUUUCCUUCUCUGCUGAGAU----------------------- (((((((((((......((((......))))...))))))))))).-----------...........................((((....)))).----------------------- ( -20.90, z-score = -3.10, R) >droVir3.scaffold_12823 658560 109 + 2474545 GACGCUGGAAAUUGACAGCAAUUUUCUUUUCACUUUUCGCAUUUCCCAUGAUUAUGCGGCGAUUAUAAUAAAUGCGAAUUUCCUUGCCCAUUUCCUUA-----GCUGUGGCUAU------ ...((.((((((((....)))))))).........(((((((((...((((((.......))))))...))))))))).......)).........((-----((....)))).------ ( -21.20, z-score = -0.40, R) >droGri2.scaffold_15245 16226165 115 - 18325388 GACGCUGGAAAUUGACAGCAAUUUUCUUUUCACUUUUCGCAUUUCCCAUGAUUAUGCGACGAUUAUAAUAAAUGCGAAUUUCCUUGCCCAUUUCCUUG-----GCUGUGGCUACGAAUAU ...((.((((((((....))))))))....(((..(((((((((...((((((.......))))))...))))))))).......(((.........)-----)).)))))......... ( -22.90, z-score = -1.01, R) >droMoj3.scaffold_6496 25757104 108 + 26866924 ----CUGGAAAUUGAGGACAAUUUUCUUUUCACUUUUCGCAUUUCCUAUGAUUAGGCGACGAUUAUAAUAAAUGCGAAUUUCCUCGGCCAUUUCCGCA-----GCUGCGGCUAUGAA--- ----..(((((.((((((........))))))...(((((((((..(((((((.(....))))))))..)))))))))))))).....(((..((((.-----...))))..)))..--- ( -30.10, z-score = -2.42, R) >consensus GCGGCGGGAAAUUGACAGCAAUUUUCUUUGCACUUUUCGCAUUUCCU__________UGCGAUUAUAAUAAAUGCGAAUUUCCUCGGCCAUUUCCUCA_____GCAGUUGCUACGAAAAU ...((.((((((((....)))))))).........(((((((((.........................))))))))).........................))............... (-12.35 = -12.62 + 0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:39 2011