| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,828,740 – 16,828,849 |
| Length | 109 |
| Max. P | 0.984978 |
| Location | 16,828,740 – 16,828,849 |
|---|---|
| Length | 109 |
| Sequences | 11 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 63.87 |
| Shannon entropy | 0.78092 |
| G+C content | 0.55042 |
| Mean single sequence MFE | -22.29 |
| Consensus MFE | -12.32 |
| Energy contribution | -12.75 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.13 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.19 |
| SVM RNA-class probability | 0.984978 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16828740 109 + 21146708 ---UCCUCG--UCGUCAUCGUCUGUGUGCAUUCCGCUUGAGCUGUCAAAUGCGCAUCGCGACUGUAUCCCUCCCGAAUCCGAAUCGGAAUCCCAAUCCCAGUCCCAGUCCCAAG------ ---......--........(.(((((((((((..((.......))..))))))))....(((((..........((.((((...)))).)).......))))).))).).....------ ( -20.83, z-score = -0.89, R) >droSim1.chr2R 15483058 106 + 19596830 UCCUCGUCG--UCGCCGUCGUCUGUGUGCAUUCCGCUUGAGCUGUCAAAUGCGCAUCGCGACUGUAUCCCUCCCGAAUCCGAAUCGGAAUCCCAAUCCCAGUCGCAAG------------ ....((.((--....)).))...(((((((((..((.......))..))))))))).(((((((..........((.((((...)))).)).......)))))))...------------ ( -27.73, z-score = -1.94, R) >droSec1.super_9 159949 106 + 3197100 UCCUCGUCG--UUGUCGUCGUCUGUGUGCAUUCCGCUUGAGCUGUCAAAUGCGCAUCGCGACUGUAUCACUCCCGAAUCCGAAUCGGAAUCCCAAUCCCAGUCGCAAG------------ ....((.((--....)).))...(((((((((..((.......))..))))))))).(((((((..........((.((((...)))).)).......)))))))...------------ ( -28.23, z-score = -1.85, R) >droYak2.chr2R 8770195 115 - 21139217 ---UCCUCG--UCGUCAUCGUCUGUGUGCAUUCCGCUUCAGCUGUCAAAUGCGCAUCGCGACUGUAUCCCUCCCGAAUCCAAAUCCCAAUACGUAUACGAAUCUCAGUACUAGUAGCAAG ---.....(--((((........(((((((((..((.......))..))))))))).)))))...........................(((...(((........)))...)))..... ( -18.00, z-score = -0.23, R) >droEre2.scaffold_4845 10971111 115 + 22589142 ---UCCUCG--UCGUCAUCGUCUGUGUGCAUUCCGCUUGAGCUGUCAAAUGCGCAUCGCGACUGUAUCCCUCCCGAAUCCGAAUUCGAAUCCCAGUCCCAGUCCUAGUCCCGGUCCCGAG ---......--(((..((((...(((((((((..((.......))..)))))))))...(((((.........(((((....)))))...........))))).......))))..))). ( -24.05, z-score = -0.83, R) >droAna3.scaffold_13266 16128149 86 - 19884421 ---UCGUCA--UCCUCAUCGGCUGUGUGCAUUCCGGUUGAGCUGUCAAAUGCGCAUCGCAACAGUAUCCCUUCCGAAUUCCCAAUCCCGAC----------------------------- ---......--......((((...((.(.((((.((..(((((((....((((...))))))))).))....)))))).).))...)))).----------------------------- ( -17.00, z-score = -0.10, R) >dp4.chr3 11458174 100 - 19779522 ---UCAUCA--UUGUCGUCGCCUGUGUGCAUUCCGCUUGAGCUGUCAAAUGCGCAUCGCGACUGUAUCCCUCCCGUGUUUGUAGACGUAUCUGUGUGAUGUGGUG--------------- ---.(((((--(.((((((((..(((((((((..((.......))..))))))))).)))))...........(((.(....).))).........)))))))))--------------- ( -26.60, z-score = -0.66, R) >droPer1.super_4 4959227 100 - 7162766 ---UCAUCA--UUGUCGUCGCCUGUGUGCAUUCCGCUUGAGCUGUCAAAUGCGCAUCGCGACUGUAUCCCUCCCGUGUUUGUAGACGUAUCUGUGUGAUGUGGUG--------------- ---.(((((--(.((((((((..(((((((((..((.......))..))))))))).)))))...........(((.(....).))).........)))))))))--------------- ( -26.60, z-score = -0.66, R) >droWil1.scaffold_181141 5142070 87 + 5303230 ---UCACCACGUUGUCGGCGACUGUGUGCAUUCCGCUUGAGCUGUCAAAUGCGCAUCGCGUCUCUCUCUCUCUCGGUCUCUUAUGUGGUG------------------------------ ---.((((((((....((((.(.(((((((((..((.......))..))))))))).)))))....((......))......))))))))------------------------------ ( -25.30, z-score = -1.84, R) >droVir3.scaffold_12823 648834 99 - 2474545 -----UCAUGCUCGUCAUCGUCUGUGUGCAUUCCGCUUGGCCUGUCAAAUGCGCAGCGC-CCUGUAUCCCUGCUAA---CCCCAACCCGCCUAUCCCGUCCACACCCC------------ -----..............(..((((..(.....((..(((((((.......)))).))-)..))......((...---.........)).......)..))))..).------------ ( -14.70, z-score = 0.21, R) >droGri2.scaffold_15245 16216745 107 + 18325388 -----------UCGUCCUUGUCUGUGUGCAUUCCGCUUGGCCUGUCAAAUGCGCAGUGCGUCUGUAUAACUGCUUAACUUCCCCCCCUCCCCUCCCCUUUCACCUCCCACACACCACC-- -----------...........((((((((((..((.......))..)))))(((((...........)))))...................................))))).....-- ( -16.20, z-score = -1.80, R) >consensus ___UCAUCG__UCGUCAUCGUCUGUGUGCAUUCCGCUUGAGCUGUCAAAUGCGCAUCGCGACUGUAUCCCUCCCGAAUCCGAAUCCGAAUCCCAAUCCCAGUCCCA______________ .................(((.(.(((((((((..((.......))..))))))))).))))........................................................... (-12.32 = -12.75 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:38 2011