| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,820,767 – 16,820,867 |
| Length | 100 |
| Max. P | 0.975442 |
| Location | 16,820,767 – 16,820,867 |
|---|---|
| Length | 100 |
| Sequences | 10 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 82.98 |
| Shannon entropy | 0.34329 |
| G+C content | 0.41138 |
| Mean single sequence MFE | -24.22 |
| Consensus MFE | -18.13 |
| Energy contribution | -18.33 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.93 |
| SVM RNA-class probability | 0.975442 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 16820767 100 + 21146708 ---CCUUUUUGGGUGG-AACGACACUUUGCGGCACAAGUUUUCCAAUAAAACGGCAAAACUUUGCUGCGAACAAAAUUAAAGAAGACGACAAGG--AAAAUGGUAG-------- ---((((.(((((((.-.....))))((((((((.(((((((((........)).)))))))))))))))................))).))))--..........-------- ( -27.40, z-score = -3.03, R) >droSec1.super_9 151969 99 + 3197100 ---CCUUUUUGGGUGG-AACGACACUUUGCGGCACAAGUUUUCCAAUAAAACGGCAAAACUUUGCUGCGAACAAAAUUAAAGAAGACGACAAGA---AAAUGGUAG-------- ---..((((((((((.-.....))))((((((((.(((((((((........)).)))))))))))))))...................)))))---)........-------- ( -25.20, z-score = -2.48, R) >droYak2.chr2R 8761848 103 - 21139217 CUUUUUUUUUGGGUGG-AACGACACUUUGCGGCACAAGUUUUCCAAUAAAACGGCAAAACUUUGCUGCGAACAAAAUUAAAGAAGACGACAAGG--AAAAUGGUAG-------- ((((..(((((((((.-.....))))((((((((.(((((((((........)).))))))))))))))).)))))..))))............--..........-------- ( -28.00, z-score = -3.15, R) >droEre2.scaffold_4845 10962850 100 + 22589142 ---CUUUUUUGGGUGG-AACGACACUUUGCGGCACAAGUUUUCCAAUAAAACGGCAAAACUUUGCUGCGAACAAAAUUAAAGAAGACGACAAGG--AAAAUGGUAG-------- ---((((((((((((.-.....)))(((((((((.(((((((((........)).)))))))))))))))).....))))))))).........--..........-------- ( -26.70, z-score = -3.04, R) >droAna3.scaffold_13266 16119504 95 - 19884421 ----------GGGCGG-GACGACACUUUGCGGCAGAAGUUUUCCAAUAAAACGGCAAAACUUUGCUGCGAACAAAAUUAAAGAAGACGACAAGGCAAAAAUGGUAG-------- ----------..(((.-.....)..(((((((((((.(((((((........)).))))))))))))))))......................))...........-------- ( -20.20, z-score = -1.09, R) >droPer1.super_4 4948567 102 - 7162766 ---CAUUUUGGGGCAACAACGACACUUUGCGGCCGAAGUUUUCCAAUAAAACGGCAAAACUUUGCUGCGAACAAAAUUAAAGAAGACGACAAGG--AAAAUGCUAGC------- ---.((((((.(....)........((((((((.((((((((((........)).)))))))))))))))))))))).................--...........------- ( -22.60, z-score = -1.42, R) >dp4.chr3 11447455 102 - 19779522 ---CAUUUUGGGGCAACAACGACACUUUGCGGCCGAAGUUUUCCAAUAAAACGGCAAAACUUUGCUGCGAACAAAAUUAAAGAAGACGACAAGG--AAAAUGCUAGC------- ---.((((((.(....)........((((((((.((((((((((........)).)))))))))))))))))))))).................--...........------- ( -22.60, z-score = -1.42, R) >droWil1.scaffold_181141 5130158 110 + 5303230 -UCUCUUUUUGGGCAA---CGACACUUUGCGGCAGAAGUUUUCCAAUAAAAUGGCAAAACUUUGCUGCGAACAAAAUUAAAGAAGACGGCAAGGAAAAUGUAUCCACAAGUGAG -..(((((((.(....---).....(((((((((((.((((((((......))).))))))))))))))))........)))))))......(((.......)))......... ( -27.30, z-score = -1.70, R) >droVir3.scaffold_12823 628936 98 - 2474545 ------UUUUGGGCGA---CGACACUUUGCGGCAGAAGUUUUCCAAUAAAACGGCAAAACUUUGCUGCGAACAAAAUUAAAGAAGACGACGACAACGAC--AACGACAA----- ------((((((....---).....(((((((((((.(((((((........)).))))))))))))))))))))).......................--........----- ( -21.10, z-score = -1.99, R) >droGri2.scaffold_15245 16206455 83 + 18325388 ------UUUUGGGCGA---CAACACUUUGCGGCAGAAGUUUUCCAAUAAAACGGCAAAACUUUGCUGCGAACAAAAUUAAAGAAGACGACAA---------------------- ------((((((....---).....(((((((((((.(((((((........)).)))))))))))))))))))))................---------------------- ( -21.10, z-score = -2.65, R) >consensus ___C_UUUUUGGGCGA_AACGACACUUUGCGGCAGAAGUUUUCCAAUAAAACGGCAAAACUUUGCUGCGAACAAAAUUAAAGAAGACGACAAGG__AAAAUGGUAG________ .........................(((((((((.(((((((((........)).))))))))))))))))........................................... (-18.13 = -18.33 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:37 2011