| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,819,996 – 16,820,133 |
| Length | 137 |
| Max. P | 0.529523 |
| Location | 16,819,996 – 16,820,133 |
|---|---|
| Length | 137 |
| Sequences | 6 |
| Columns | 157 |
| Reading direction | reverse |
| Mean pairwise identity | 81.14 |
| Shannon entropy | 0.33433 |
| G+C content | 0.45362 |
| Mean single sequence MFE | -44.42 |
| Consensus MFE | -20.51 |
| Energy contribution | -21.65 |
| Covariance contribution | 1.15 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.529523 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16819996 137 - 21146708 --------ACAAGCUGGUUAAAGGUUCAUUUGGAGAGAG------GGAAACCUUUUAUCUCUACCCAUGGGGGGUACUGGGUAUCAG-UUGGUGCGAUCUACUUACAACUCAGUG---CCAAC--GUAUGGCAUAAGCAUAUUAUGCCGUCAACAGG --------.....((((((...........(((((((((------(....))))...))))))(((...)))((((((((((....(-(.((((.....)))).)).))))))))---)))))--(.(((((((((.....))))))))))..))). ( -46.50, z-score = -2.78, R) >droSim1.chr2R 15474039 137 - 19596830 --------ACAAGCUGGUUAAAGGUUCAUUUGGGGAGAG------CGAAACCUUUUAUCUCUCCCCAUGGGGGGCACUGGGUAUCAG-UUGGUGCGAUCUACUUACAACUCAGUG---CCAAC--GUAUGGCAUAAGCAUAUUAUGCCGUCAACAGG --------.....((((((.....(((...(((((((((------.(((....)))..)))))))))..)))((((((((((....(-(.((((.....)))).)).))))))))---)))))--(.(((((((((.....))))))))))..))). ( -49.90, z-score = -3.31, R) >droSec1.super_9 151196 137 - 3197100 --------ACAAGCUGGUUAAAGGUUCAUUUGGGGAGAG------CGAAAACUUUUAUCUCUCCCCAUGGGGGGCACUGGGUAUCAG-UUGGUGCGAUCUACUUACAACUCAGUG---CCAAC--GUAUGCCAUAAGCAUAUUAUGCCGUCAACAGG --------.....(((......(((.....(((((((((------.(((....)))..)))))))))..(..((((((((((....(-(.((((.....)))).)).))))))))---))..)--((((((.....))))))...))).....))). ( -45.90, z-score = -2.44, R) >droYak2.chr2R 8761049 140 + 21139217 --------ACAAGCUGGUUAAAGGUUCAUUUGGAAAGAG------UGAAACCUUUUAUCUCUGCCCAUGGGGGGCACUGGGUAUCAG-UUGGUGCGAUCUACUUACAACACAGUGCUCUCAACCUAUAUGGCAUAAGC--AUUAUGCCGUCAACAGG --------....((.(((.((((((((((((.....)))------)).))))))).)))...)).....((((((((((.(((..((-(.(((...))).))))))....))))))))))..(((..((((((((...--..))))))))....))) ( -43.20, z-score = -1.54, R) >droEre2.scaffold_4845 10962063 135 - 22589142 --------ACAAGCUGGUUAAAGGUUCAUUUAGAAAGAG------UGAAACCUUUUAUCUCUCCCCAUGGGGGGCACUGGGUAUCAG-UUGGUGCGAUCUACUUACAACUCAGUGC--CCAAC---UAUGGCAUAAGC--AUUAUGCCGUCAACAGG --------.....((((((((((((((((((.....)))------)).))))))).......(((...)))(((((((((((....(-(.((((.....)))).)).)))))))))--)))))---.((((((((...--..))))))))...))). ( -44.90, z-score = -2.46, R) >droAna3.scaffold_13266 16118649 149 + 19884421 AUUGUUUAAAAAUCGUUUUAAAAACCCCGGAAAAUAGAAAUUUCCCCUUAGCUUUUAUCUUUCCCAAUGGGGGGUACUUGAAAUCAGCUCGGGGAAAUCUACUUUCAACUCGCU----AUAAC--CUUUGGCAUAAUC--AUUUUGCCAGCGACAGG ....(((((((....)))))))....((.((((.((((..(((((((..((((((((...(((((....)))))....))))...)))).))))))))))).))))...(((((----.....--....((((.....--....)))))))))..)) ( -36.10, z-score = -1.29, R) >consensus ________ACAAGCUGGUUAAAGGUUCAUUUGGAGAGAG______CGAAACCUUUUAUCUCUCCCCAUGGGGGGCACUGGGUAUCAG_UUGGUGCGAUCUACUUACAACUCAGUG___CCAAC__GUAUGGCAUAAGC__AUUAUGCCGUCAACAGG .............(((......((....................................(((((....)))))((((((((.......(((......)))......))))))))...)).......(((((((((.....)))))))))...))). (-20.51 = -21.65 + 1.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:37 2011