| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,803,175 – 16,803,266 |
| Length | 91 |
| Max. P | 0.972071 |
| Location | 16,803,175 – 16,803,266 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 72.71 |
| Shannon entropy | 0.40867 |
| G+C content | 0.35310 |
| Mean single sequence MFE | -20.45 |
| Consensus MFE | -10.76 |
| Energy contribution | -11.95 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.56 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.86 |
| SVM RNA-class probability | 0.972071 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16803175 91 - 21146708 GCUCUUCAUA-UCAUAAGUAGUUACUCUCCAAAUUCAGCUGUACAUUUCUAGCAAAUCAUGUAUGUAUAUGGAGUAGCUACUUAAAAGCCCA-------------- ..........-...(((((((((((((..........((((........))))....(((((....))))))))))))))))))........-------------- ( -23.20, z-score = -4.04, R) >droEre2.scaffold_4845 10945321 101 - 22589142 AUAGUUGAUAUCCAUGAGUGGAUACUCUUCAAAUUAAACUGGAAAUUUCCAACAAAUC----AUGUAAGUAAAA-AGCUACUUAUUUGCUGUGGGAAGUCAGCCUU ...((((((.(((..((((....))))............((((....)))).((...(----(.(((((((...-...))))))).))...))))).))))))... ( -23.10, z-score = -1.78, R) >droSec1.super_9 134752 87 - 3197100 GCUCUUCAUA-CCAUAAGUAGUUACUCUCCAAAUUCAGCUGUACAUUUUUAGCAAAUC----AUGUAUCUGCAGUGGCUACUUAUUAGCCUU-------------- ..........-..((((((((((((............((((........)))).....----.(((....))))))))))))))).......-------------- ( -17.90, z-score = -2.31, R) >droSim1.chr2R 15456948 87 - 19596830 GCUCUUCAUA-CCAUAAGUAGUUACUUUCCAAAUUCAGCUGUACAUUUGUAGCAAAUC----AUGUAUCUGCAGUAGCUACUUAUUAGCCUU-------------- ..........-..((((((((((((............((((........)))).....----.(((....))))))))))))))).......-------------- ( -17.60, z-score = -2.11, R) >consensus GCUCUUCAUA_CCAUAAGUAGUUACUCUCCAAAUUCAGCUGUACAUUUCUAGCAAAUC____AUGUAUCUGCAGUAGCUACUUAUUAGCCUU______________ ..............(((((((((((............((((((....))))))..........(((....))))))))))))))...................... (-10.76 = -11.95 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:33 2011