| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,788,914 – 16,789,022 |
| Length | 108 |
| Max. P | 0.510731 |
| Location | 16,788,914 – 16,789,022 |
|---|---|
| Length | 108 |
| Sequences | 7 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 67.63 |
| Shannon entropy | 0.59021 |
| G+C content | 0.29691 |
| Mean single sequence MFE | -19.84 |
| Consensus MFE | -9.79 |
| Energy contribution | -7.43 |
| Covariance contribution | -2.36 |
| Combinations/Pair | 1.63 |
| Mean z-score | -0.88 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.510731 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16788914 108 - 21146708 AUAUUAAUAUAUUAAUAAUUCCGAAUACACAUAUGUAC--AUAUG----UAUGUGCGUGUGUGCAGGUGAAUAAAUUAUUUUUACCACACUGUUGAUCAACGAUUCAAGCACUU .((((((....)))))).....((((.(((((((((((--((...----.)))))))))))))..((((((.........))))))....((((....))))))))........ ( -24.90, z-score = -1.85, R) >droSim1.chr2R 15442694 110 - 19596830 AUAUUAAUAUAUUAAUAAAUCCGAAUACACAUAUGUACGUGUAUG----UAUGUGCGUGUGUGCAGGUGAAUAAAUUAUUUUUACCACACUGUUGAUCAACGAUUCAAGCACUU .((((((....)))))).....((((.((((((((((((((....----))))))))))))))..((((((.........))))))....((((....))))))))........ ( -25.40, z-score = -1.20, R) >droSec1.super_9 114392 110 - 3197100 AUAUUAAUAUAUUAAUAAAUCCGAAUACUCAUAUGUACGUGUAUG----UAAGUGCGUGUGUGCAGGUGAAUAAAUUAUUUUUACCACACUGUUGAUCAACGAUUCAAGCACUU .((((((....)))))).............((((((((.......----...))))))))((((.((((((.........))))))......((((........)))))))).. ( -20.80, z-score = -0.18, R) >droYak2.chr2R 8729091 103 + 21139217 AUAUUAAUAUAUUAAUAAAUC-----AUACAUACAUAC--GUAUG----UAUGUACGUGUGUGCAGAUGAAUAAAUUAUUUUUACCACACUGUUGAUCAACGAUUCAAGCACUU ..........(((((((...(-----((((((((....--)))))----))))...(((((((.((((((.....)))))).)).))))))))))))................. ( -20.10, z-score = -1.14, R) >droEre2.scaffold_4845 10930992 114 - 22589142 AUAUUAAUAUAUUAAUAAAUCCGAGUACACGCACUCAUACAUAUGUGCAUAUGUACGUGUGUGCGGGCGAAUAAAUUAUUUUUACCACACUGUUGAUCAACGGUUCAAGCACUU .((((((....))))))...((((((......)))).(((((((((((....))))))))))).))((...((((.....))))....((((((....))))))....)).... ( -24.80, z-score = -0.78, R) >dp4.chr3 11412718 85 + 19779522 ----------------------------AUAUUAAUAUUUAUAUUGUAAAACAUAUUAAUACGCUG-CAAACAAACUGAUUUCGCCACAUUGUUGAUCAAUUGUUCAAGCACUU ----------------------------.(((((((((..............))))))))).(((.-..(((((..(((((..((......)).))))).)))))..))).... ( -11.44, z-score = -0.51, R) >droPer1.super_4 4914064 85 + 7162766 ----------------------------AUAUUAAUAUUUAUAUUGUAAAACAUAUUAAUACGCUG-CAAACAAACUGAUUUCGCCACAUUGUUGAUCAAUUGUUCAAGCACUU ----------------------------.(((((((((..............))))))))).(((.-..(((((..(((((..((......)).))))).)))))..))).... ( -11.44, z-score = -0.51, R) >consensus AUAUUAAUAUAUUAAUAAAUCCGA_UACACAUAUAUAC_UAUAUG____UAUGUACGUGUGUGCAGGUGAAUAAAUUAUUUUUACCACACUGUUGAUCAACGAUUCAAGCACUU .............................(((((((((..............))))))))).((.......((((.....))))........((((........)))))).... ( -9.79 = -7.43 + -2.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:32 2011