| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,786,056 – 16,786,110 |
| Length | 54 |
| Max. P | 0.999318 |
| Location | 16,786,056 – 16,786,110 |
|---|---|
| Length | 54 |
| Sequences | 7 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 81.19 |
| Shannon entropy | 0.35627 |
| G+C content | 0.36216 |
| Mean single sequence MFE | -10.73 |
| Consensus MFE | -5.77 |
| Energy contribution | -6.24 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.20 |
| Mean z-score | -4.21 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.79 |
| SVM RNA-class probability | 0.999318 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16786056 54 + 21146708 ------UUCAGGGCGUCGAGAGACGCCACAUAAAACC-AUAAAUAUAAAUAUCAACAAAUA ------.....((((((....))))))..........-....................... ( -14.00, z-score = -6.01, R) >droSim1.chr2R 15439718 54 + 19596830 ------UUCAGGGCGUCGAGAGACGCCACAUAAAACC-AUAAAUAUAAAUAUCAACAAAUA ------.....((((((....))))))..........-....................... ( -14.00, z-score = -6.01, R) >droSec1.super_9 111437 54 + 3197100 ------UUCAGGGCGUCGAGAGACGCCACAUAAAACC-AUAAAUAUAAAUAUCAACAAAUA ------.....((((((....))))))..........-....................... ( -14.00, z-score = -6.01, R) >droYak2.chr2R 8725976 54 - 21139217 ------UUCAGAGCGUCGAGAGACGCCACAUAAAACC-AUAAAUAUAAAUAUCAACAAAUA ------....(.(((((....))))))..........-....................... ( -10.40, z-score = -6.02, R) >droEre2.scaffold_4845 10928079 54 + 22589142 ------UUCAGAGCGUCGAGAGACGCCACAUAAAACC-AUAAAUAUAAAUAUCAACAAAUA ------....(.(((((....))))))..........-....................... ( -10.40, z-score = -6.02, R) >droAna3.scaffold_13266 16083692 59 - 19884421 UGCAGUGCUUGGACGCC-AGAGACGCCGCAUAAAAUC-AUAAAUCUAAAUAUCAACAAAUA (((.((((((((...))-).)).))).))).......-....................... ( -7.60, z-score = -0.10, R) >droGri2.scaffold_15245 16162828 52 + 18325388 ------UUCAACGAGU---GCAGCGCCACAUAAGACCCAUAAAUUAAAAAGGCGGAAAGUA ------..........---....((((.......................))))....... ( -4.70, z-score = 0.68, R) >consensus ______UUCAGGGCGUCGAGAGACGCCACAUAAAACC_AUAAAUAUAAAUAUCAACAAAUA ............(((((....)))))................................... ( -5.77 = -6.24 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:31 2011