| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,751,604 – 16,751,678 |
| Length | 74 |
| Max. P | 0.900786 |
| Location | 16,751,604 – 16,751,678 |
|---|---|
| Length | 74 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 84.72 |
| Shannon entropy | 0.25364 |
| G+C content | 0.49676 |
| Mean single sequence MFE | -23.70 |
| Consensus MFE | -18.96 |
| Energy contribution | -18.68 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.900786 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16751604 74 - 21146708 -------------------CUGUUCAGUUCGUCCUGGCGAUAACCUUUGACACGGCAAUACACAAAUAUCGCUGCAGCCAGGCGAGUUGACAU -------------------.(((.((..(((.((((((((......))....((((.(((......))).))))..)))))))))..))))). ( -22.50, z-score = -2.04, R) >droAna3.scaffold_13266 16048276 93 + 19884421 CAGACUCCUGGGUGGACUACUGCUCAGUGGGUCCUGGCGAUAACUUUUGACAUGGCAAUACACAAAUAUCGCUGCAACCAGGUGAGUUGACAU ..(((((((((..((((((((....))).))))).(((((((...((((...((......)))))))))))))....)))))..))))..... ( -27.30, z-score = -0.94, R) >droEre2.scaffold_4845 10893791 73 - 22589142 --------------------UGUUCAGCUCGCGCUGGCGAUAACUUUUGACACGGCAAUACACAAAUAUCGCUGCAGCCAGGCGAGUUGACAU --------------------(((.((((((((.(((((.....(....)...((((.(((......))).))))..)))))))))))))))). ( -28.00, z-score = -3.64, R) >droYak2.chr2R 8690721 73 + 21139217 --------------------UGUUCGGUUCGUUUUGGCGAUAACUUUUGACACGGCAAUACACAAAUAUAGCUGCAGCCAGGCGAGUUGACAU --------------------(((.(..(((((((.(((.....(....)...((((.(((......))).))))..))))))))))..)))). ( -17.70, z-score = -0.81, R) >droSim1.chr2R 15405762 74 - 19596830 -------------------CUGUUCAGUUCGUCCUGGCGAUAACCUUUGACACGGCAAUACACAAAUAUCGCUGCAGCCAGGCGAGUUGACAU -------------------.(((.((..(((.((((((((......))....((((.(((......))).))))..)))))))))..))))). ( -22.50, z-score = -2.04, R) >droSec1.super_9 77099 74 - 3197100 -------------------CUGUUCAGUUCGCCCUGGCGAUAACCUUUGACACGGCAGUACACAAAUAUCGCUGCAGCCAGGCGAGUUGACAU -------------------.(((.((..(((((.((((((......))......(((((...........))))).)))))))))..))))). ( -24.20, z-score = -2.13, R) >consensus ___________________CUGUUCAGUUCGUCCUGGCGAUAACCUUUGACACGGCAAUACACAAAUAUCGCUGCAGCCAGGCGAGUUGACAU ....................((.((((((((.((((((((......))....((((.(((......))).))))..)))))))))))))))). (-18.96 = -18.68 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:30 2011