| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,750,878 – 16,750,968 |
| Length | 90 |
| Max. P | 0.547731 |
| Location | 16,750,878 – 16,750,968 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 62.47 |
| Shannon entropy | 0.63939 |
| G+C content | 0.51335 |
| Mean single sequence MFE | -25.52 |
| Consensus MFE | -7.49 |
| Energy contribution | -9.45 |
| Covariance contribution | 1.96 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.547731 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16750878 90 + 21146708 CAGAGCUGCAAUGCAACUGGCCAAAAUGAUCAAAAUGGUUGAGAUGGCAGGACACAAGGAUACCAUGGAUAUAAACAUGGGUG--UGGCUCG ..((((..((......((.((((...(((((.....)))))...)))).))...........(((((........))))).))--..)))). ( -27.50, z-score = -2.66, R) >droSec1.super_9 76406 87 + 3197100 CAGAGCUGCAAUGCAACUGGCCAAAAUGGCCAAAAUGGCCGAGAUGGCAGGACACAAGGAUACCAUGGAUA---ACAUGGGUG--UGGGUCG ..((.(..((......((.((((...(((((.....)))))...)))).))...........(((((....---.))))).))--..).)). ( -30.50, z-score = -2.48, R) >droSim1.chr2R 15405055 78 + 19596830 CAGAGCUGCAAUGCAACUGGCCAAAAUGGCC---------GAGAUGGCAGGACACAAGGAUACGAUGGAUA---ACGUGGGUG--UGGGUCG ..((.(..((.(((..((((((.....))))---------.))...))).............(.(((....---.))).).))--..).)). ( -21.60, z-score = -0.95, R) >droYak2.chr2R 8690038 72 - 21139217 CAGCGCUGCAAUGCAACUGGCCAGAAUGGCCA--------AAAUCUGCAGGACACA-------CAAGGAUA---CCAUGAAUG--UGGCUCA .(((.(((((.......(((((.....)))))--------.....)))))..((((-------((.((...---)).))..))--))))).. ( -20.40, z-score = -0.57, R) >droVir3.scaffold_12823 535765 81 - 2474545 CGGCACAGGAUUAGAAACAGGCUUCUCAGCUU--------CAGCUGGGAGGGGGUGUGUGCUGGAUAAAUA---GCAUAAAUCCUUGACUCG .......(..((((.......(((((((((..--------..)))))))))((((.(((((((......))---))))).))))))))..). ( -27.60, z-score = -2.38, R) >consensus CAGAGCUGCAAUGCAACUGGCCAAAAUGGCCA________GAGAUGGCAGGACACAAGGAUACCAUGGAUA___ACAUGGGUG__UGGCUCG .....((((........(((((.....)))))..............))))(((.((......(((((........))))).....)).))). ( -7.49 = -9.45 + 1.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:29 2011