| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,740,231 – 16,740,342 |
| Length | 111 |
| Max. P | 0.658716 |
| Location | 16,740,231 – 16,740,342 |
|---|---|
| Length | 111 |
| Sequences | 10 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 71.51 |
| Shannon entropy | 0.60083 |
| G+C content | 0.49261 |
| Mean single sequence MFE | -30.09 |
| Consensus MFE | -13.50 |
| Energy contribution | -14.05 |
| Covariance contribution | 0.55 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.658716 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16740231 111 - 21146708 UUUCCUAACUAAGCACGCAAAUGAAGCGUGUGCCCAUCAAGGAUGCGACUCUAUCUCUCUG-CGGUUGCACAUGGCAGUUAUACGAAUACGAGUACGGUUGCGAUGCGUAUA---- ..((((......((((((.......))))))........))))(((((((.((......))-.)))))))(((.(((((..(((........)))..))))).)))......---- ( -29.44, z-score = 0.18, R) >droSec1.super_9 65835 111 - 3197100 UUUCCUAACUAAGCACGCAAAUGAAGCGUGUGCCCAUCAAGGAUGCGACUCUAUCUCUCUG-CGGUUGCACAUGGCAGUUAUACGAAUACGAGUACGGCUGCGAUGCGUAUA---- ..((((......((((((.......))))))........))))(((((((.((......))-.)))))))(((.(((((..(((........)))..))))).)))......---- ( -34.74, z-score = -1.31, R) >droSim1.chr2R 15394397 111 - 19596830 UUUCCUAACUAAGCACGCAAAUGAAGCGUGUGCCCAUCAAGGAUGCGACUCUAUCUCUCUG-CGGUUGCACAUGGCAGUUAUACGAAUACGAGUACGGCUGCGAUGCGUAUA---- ..((((......((((((.......))))))........))))(((((((.((......))-.)))))))(((.(((((..(((........)))..))))).)))......---- ( -34.74, z-score = -1.31, R) >droYak2.chr2R 8679056 107 + 21139217 UUUCCUAACUAAGCACGCAAAUGAAGCGUGUGCCCAUCAAGGAUGCGACUCCAUCUCUCUG-CGGUUGCACAUGGCAGUU------AUACGAGUAUGGCUGCGAUGCGUAUACG-- ..((((......((((((.......))))))........))))(((((((.((......))-.)))))))(((.((((((------(((....))))))))).)))........-- ( -35.84, z-score = -1.83, R) >droEre2.scaffold_4845 10882579 105 - 22589142 UUCCCCAACUAAGCACGCAAAUGAAGCGUGUGCCCAUCAAGGAUGCGACUCUAUCUCUCUG-CGGUUGCACAUGGCAGUU------GUACGAGUACGGCUGCGAUGCGUAUA---- .(((........((((((.......)))))).........)))(((((((.((......))-.)))))))(((.((((((------(((....))))))))).)))......---- ( -34.53, z-score = -1.10, R) >droAna3.scaffold_13266 16037440 90 + 19884421 UUUCCUAACUAAGCACGCAAAUGAAGCGUGUGCCCAUCAAGGAUGCGACUCUAUCUCUCUG-CGGUUGCACAUCCC----------CUACAAAUACAUAUA--------------- ..((((......((((((.......))))))........))))(((((((.((......))-.)))))))......----------...............--------------- ( -19.14, z-score = -1.54, R) >dp4.chr3 11362244 99 + 19779522 UUUCCUAACUAAGCACGCAAAUGAAGCGUGCGCCCAUCAAGGAUGCGACUCUAUCUCUCUG-CGGUUGUCUCUAU-----------AUCCGUAUACGAGUGC-AUACAUAUA---- ..((((......((((((.......))))))........))))(((.(((((((......(-(((.(((....))-----------).))))))).))))))-)........---- ( -23.94, z-score = -1.13, R) >droPer1.super_4 4863164 99 + 7162766 UUUCCUAACUAAGCACGCAAAUGAAGCGUGCGCCCAUCAAGGAUGCGACUCUAUCUCUCUG-CGGUUGUCUCUAU-----------AUCCGUAUACGAGUGC-AUACAUAUA---- ..((((......((((((.......))))))........))))(((.(((((((......(-(((.(((....))-----------).))))))).))))))-)........---- ( -23.94, z-score = -1.13, R) >droVir3.scaffold_12823 519418 90 + 2474545 UUUCCUAACUAAGCACGCAAAUGAAGCGUGCACGCAUCAAGGAUGCGCCUCUUUCUCUG---UCGCCAGCUCGAGUCCUGUGCGAUGCACAAA----------------------- ............((((((.......)))))).((((((...))))))...........(---(((((((........))).))))).......----------------------- ( -26.40, z-score = -1.11, R) >droGri2.scaffold_15245 16108825 116 - 18325388 UUUCCUAACUAAGCACGCAAGUGAUUCGUGCACGCAUCAAGGAUGAGCCUCCCUAUCGGCACUGGCUGGCUCCUCCACUGUGCGUCGUCCUCGACGAGAGCUCAAUCAGGCACAUG .............(((....)))....((((.(((((...(((.(((((..((..........))..))))).)))...)))))(((((...)))))............))))... ( -38.20, z-score = -1.53, R) >consensus UUUCCUAACUAAGCACGCAAAUGAAGCGUGUGCCCAUCAAGGAUGCGACUCUAUCUCUCUG_CGGUUGCACAUGGCAGUU______AUACGAGUACGGCUGCGAUGCGUAUA____ ..((((......((((((.......))))))........)))).((((((.............))))))............................................... (-13.50 = -14.05 + 0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:28 2011