| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,734,147 – 16,734,237 |
| Length | 90 |
| Max. P | 0.858009 |
| Location | 16,734,147 – 16,734,237 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 70.13 |
| Shannon entropy | 0.54995 |
| G+C content | 0.38569 |
| Mean single sequence MFE | -19.56 |
| Consensus MFE | -9.27 |
| Energy contribution | -10.30 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.858009 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16734147 90 - 21146708 CCGAUUUAA--AAACUAGCAAAUAUUUCAUUGACAAUUGUUAGGCAACUGCAACCGCAGUUGCGAGUGCAUUUAAGCAUCAGGUAAACAUAG ((.......--...(((((((...............)))))))((((((((....))))))))((.(((......))))).))......... ( -22.56, z-score = -2.69, R) >droPer1.super_4 4856929 71 + 7162766 ---AUUUGACGAAGCAGAAGAAUGCAUCAAUGGAAUUUGUGAAAAUA----AAUCGUUUGGCUGGCUGUUUUAUAGAG-------------- ---.......(((((((......((...((((..((((((....)))----)))))))..))...)))))))......-------------- ( -12.40, z-score = -0.27, R) >droEre2.scaffold_4845 10876547 89 - 22589142 CCCAUUUAA--AGG-UACCAAAUAUUUCAAUGACAAUUGCUAGGCAACUGCAACCGCAGUGGCGAAUGCAUUUAACCAUCGGGUAAACAUGG .((((....--...-((((.........((((.((.(((((.....(((((....)))))))))).)))))).........))))...)))) ( -19.07, z-score = -0.32, R) >droYak2.chr2R 8672979 89 + 21139217 CCCAUUUCA--GAG-UACCAAAUAUUUCAAUGACAAUUGUUAGGCAACUGCAACCGCAGUGGCGAGUGCAUUUAAGCAUCAGGUAAACAUGG .((((....--...-((((.......((..((((....)))).((.(((((....))))).))))((((......))))..))))...)))) ( -20.30, z-score = -1.02, R) >droSim1.chr2R 15388359 90 - 19596830 ACGAUUUAA--AAACUAGCAAAUAUUUCAUUGACAAUUGUUAGGCAACUGCAACCGCAGUUGCGAGUGCAUUUAAGCAUCAGGUAAACAUAG .........--...(((((((...............)))))))((((((((....))))))))((.(((......)))))............ ( -21.76, z-score = -2.39, R) >droSec1.super_9 59787 77 - 3197100 ACGAUUUAA--AAACUAGCAAAUAUUUCAUUGACAAUUGUUAGGCAACUGCAACCGCAGUUGCGAGUGCAUUUAAGCAU------------- .........--...(((((((...............)))))))((((((((....))))))))..((((......))))------------- ( -21.26, z-score = -2.96, R) >consensus CCGAUUUAA__AAACUAGCAAAUAUUUCAAUGACAAUUGUUAGGCAACUGCAACCGCAGUGGCGAGUGCAUUUAAGCAUCAGGUAAACAU_G ...........................................((((((((....))))))))..((((......))))............. ( -9.27 = -10.30 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:27 2011