| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,481,942 – 3,482,047 |
| Length | 105 |
| Max. P | 0.730182 |
| Location | 3,481,942 – 3,482,047 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 76.08 |
| Shannon entropy | 0.46718 |
| G+C content | 0.35669 |
| Mean single sequence MFE | -22.27 |
| Consensus MFE | -10.80 |
| Energy contribution | -13.00 |
| Covariance contribution | 2.20 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.730182 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3481942 105 + 23011544 UCUUCAGGAAGGUGAUCAAAUGAGUAAUUCAAAGGGGAGACAUAAAGUUGGUCGAGGUAUUA-AAUCUUGGCACACAUGUAAUUGCUUAUGUGACAUCACAUAACC ..........((((.(((.((((((((((((....(....).....((..((((((((....-.))))))))..)).)).)))))))))).)))))))........ ( -26.90, z-score = -2.23, R) >droSim1.chr2L 3435280 105 + 22036055 UCUUAAGGAUGGUGAUCAAAUGAGUAAUUAAAAGGGGAGACAUAAAGUUGGUCGAGGUAUUA-AAUCUUGGCACACAUGUAAUUGCUUAUGUGACAUCACAUAACU .........(((((.(((.(((((((((((.....(....).....((..((((((((....-.))))))))..))...))))))))))).))))))))....... ( -27.90, z-score = -3.23, R) >droSec1.super_129 43904 105 + 51580 UCUUCAGGAAUGUGAUCAAAUGAGUAAUUAAAAGGGGAGACAUAAAGUUGGUCGAGGUAUUA-AAUCUUGGCACACAUGUAAUUGCUUAUGUGACAUCACAUAACU .....((..(((((((((.(((((((((((.....(....).....((..((((((((....-.))))))))..))...))))))))))).)))..))))))..)) ( -30.00, z-score = -3.69, R) >droYak2.chr2L 3469521 105 + 22324452 UCUUCAGGAAGGCGAUCAAAUGUGUAAUUAAAUGGGGAGACACAAAGUUGGUGGGGGGAUUU-AAUCUUGGCACACAUGUAAUUGCUUAUGUGACAUCACAUAACC ......((..((((((...((((((.......((.(....).))......((.((((.....-..)))).))))))))...))))))((((((....)))))).)) ( -24.60, z-score = -1.02, R) >droEre2.scaffold_4929 3516681 104 + 26641161 UCUUUAGGAAGUUAAUCAAAUGAGUAAUU-AAUGGGGAGACAUAAAGUUGGUCGGCGUAUUA-AAUCUUGGCACACAUGUAAUUGCUUAUGUGACAUCACAUAACC ..........((((.....((((((((((-((((.(....).......(((((((.((....-.)).))))).))))).)))))))))))(((....))).)))). ( -18.90, z-score = -0.03, R) >droWil1.scaffold_180708 8943808 83 + 12563649 ------------AUAUCAAAAGUUUAAUCAGUUUCUUAAG--UUAAGUAGAUGAAGUAAUUCCAAUUUUUUUCCCCACUUCUCCGUUUAUGU--CAUCA------- ------------............................--.......(((((.((((...........................)))).)--)))).------- ( -5.33, z-score = -0.44, R) >consensus UCUUCAGGAAGGUGAUCAAAUGAGUAAUUAAAAGGGGAGACAUAAAGUUGGUCGAGGUAUUA_AAUCUUGGCACACAUGUAAUUGCUUAUGUGACAUCACAUAACC ...............(((.(((((((((((.....(....).........((((((((......)))))))).......))))))))))).)))............ (-10.80 = -13.00 + 2.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:13:58 2011