| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,709,113 – 16,709,208 |
| Length | 95 |
| Max. P | 0.734825 |
| Location | 16,709,113 – 16,709,208 |
|---|---|
| Length | 95 |
| Sequences | 8 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 80.39 |
| Shannon entropy | 0.36659 |
| G+C content | 0.38041 |
| Mean single sequence MFE | -25.89 |
| Consensus MFE | -11.94 |
| Energy contribution | -10.59 |
| Covariance contribution | -1.36 |
| Combinations/Pair | 1.55 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.734825 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16709113 95 - 21146708 UCUGUUGCCGAGGCAAC-UUUUGGCAUUCUUGUGUGCUUAUAACAAAAAUGCUCUUAAAG-------CACUGUUUCACUCGGCAGCCAGAUUU--AUUUUAUGUU (((((((((((((((.(-(((.((((((.((((.........)))).))))))...))))-------...)))....)))))))).))))...--.......... ( -27.40, z-score = -2.71, R) >droSim1.chr2R 15361468 95 - 19596830 GCUGUUGCCGAGGCAAC-UUUUGGCAUUCUUGUGUGCUUAUAACAAAAAUGCUCUUAAAG-------CACUGUUUCACUCGGCAGCCAGAUUU--AUUUUAUGUU .((((((((((((((.(-(((.((((((.((((.........)))).))))))...))))-------...)))....)))))))).)))....--.......... ( -26.20, z-score = -1.87, R) >droSec1.super_9 35040 95 - 3197100 GCUGUUGCCGAGGCAAC-UUUUGGCAUUCUUGUGUGCUUAUAACAAAAAUGCUCUUAAAG-------CACUGUUUCACUCGGCAGCCAGAUUU--AUUUUAUGUU .((((((((((((((.(-(((.((((((.((((.........)))).))))))...))))-------...)))....)))))))).)))....--.......... ( -26.20, z-score = -1.87, R) >droYak2.chr2R 8647094 95 + 21139217 UCUGUUGCCGAGACAAC-UUUUGGCAUUCUUGUGUGCUUAUAACAAGAAUGCUCUUAAAG-------CACUGUUUCACUCGGCAGCCAGAUUU--AUUUUAUCUU (((((((((((((((.(-(((.(((((((((((.........)))))))))))...))))-------...)))....)))))))).))))...--.......... ( -33.30, z-score = -5.25, R) >droEre2.scaffold_4845 10849042 95 - 22589142 UCUGCUGCCAAGGCAAC-UUUUGGCAUUCUUGUGUGCUUAUAACAAAAAUGCUCUUAAAG-------CACUGUUUCACUCGGCAGCCAGAUUU--AUUUUAUCUU ((((((((((((....)-))..((((((.((((.........)))).)))))).......-------.............))))).))))...--.......... ( -24.70, z-score = -2.14, R) >droAna3.scaffold_13266 16007496 94 + 19884421 UGUGUUGCCGAGGAAAC--UUUGGUAUUCUUGUAUGCUUAUGACAAAAAUGCUCUUAAAG-------UCCUUUCCAUCUCGGUAUUCAGAUUC--GUUUUAUAUU ((...((((((((((((--(((((((((.((((.........)))).))))))...))))-------)...))))...))))))..)).....--.......... ( -18.30, z-score = -1.26, R) >dp4.chr3 11332516 105 + 19779522 AUUGUUUCUGGAGCAACACUUUGGUAUUUUUGUGAGCUUAAAGCAAAAAUGCUCUUAAAGUGCAUUCCUCUGUCUCUGUGGAUGCCUAGAUUUUCGUUUUAUGUU ......(((((.(((.(((((((((((((((((.........)))))))))))...))))))...(((.(.......).)))))))))))............... ( -25.50, z-score = -1.92, R) >droPer1.super_4 4832617 105 + 7162766 AUUGUUUCUGGAGCAACACUUUGGUAUUUUUGUGAGCUUAAAGCAAAAAUGCUCUUAAAGUGCAUUCCUCUGUCUCUGUGGAUGCCUAGAUUUUCGUUUUAUGUU ......(((((.(((.(((((((((((((((((.........)))))))))))...))))))...(((.(.......).)))))))))))............... ( -25.50, z-score = -1.92, R) >consensus UCUGUUGCCGAGGCAAC_UUUUGGCAUUCUUGUGUGCUUAUAACAAAAAUGCUCUUAAAG_______CACUGUUUCACUCGGCAGCCAGAUUU__AUUUUAUGUU .((((((..((((((.......((((((.((((.........)))).)))))).................))))))...)))))).................... (-11.94 = -10.59 + -1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:24 2011