| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,705,080 – 16,705,131 |
| Length | 51 |
| Max. P | 0.957750 |
| Location | 16,705,080 – 16,705,131 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 93.79 |
| Shannon entropy | 0.09914 |
| G+C content | 0.51235 |
| Mean single sequence MFE | -11.75 |
| Consensus MFE | -11.10 |
| Energy contribution | -10.85 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.65 |
| SVM RNA-class probability | 0.957750 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16705080 51 - 21146708 UUUCCCGCCGAAUGUUUCACUUGGAUUCCUGUUCGAGUGCUGCCAAAUGCC ......((.....((..(((((((((....)))))))))..)).....)). ( -11.90, z-score = -1.91, R) >droYak2.chr2R 8642952 50 + 21139217 -CCUCCACCGAAUGUUUCACUUGGAUUCCUGUUCGAGUGCUGCCAAAUGCC -............((..(((((((((....)))))))))..))........ ( -10.70, z-score = -1.64, R) >droSec1.super_9 31089 51 - 3197100 UCUCCCGCCGAAUGUUUCACUUGGAUUCCUGUUCAAGUGCUGCCAAAUGCC ......((.....((..(((((((((....)))))))))..)).....)). ( -12.20, z-score = -2.35, R) >droSim1.chr2R 15356946 51 - 19596830 UCUCCCGCCGAAUGUUUCACUUGGAUUCCUGUUCAAGUGCUGCCAAAUGCC ......((.....((..(((((((((....)))))))))..)).....)). ( -12.20, z-score = -2.35, R) >consensus UCUCCCGCCGAAUGUUUCACUUGGAUUCCUGUUCAAGUGCUGCCAAAUGCC .............((..(((((((((....)))))))))..))........ (-11.10 = -10.85 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:23 2011