| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,703,485 – 16,703,575 |
| Length | 90 |
| Max. P | 0.781403 |
| Location | 16,703,485 – 16,703,575 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 62.81 |
| Shannon entropy | 0.65487 |
| G+C content | 0.51264 |
| Mean single sequence MFE | -29.17 |
| Consensus MFE | -12.57 |
| Energy contribution | -12.97 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.781403 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16703485 90 - 21146708 ----CACCAUGUUUGUGUGU--------------GGGGAAAGUGGGCUCCAGUGGUGCUCAAGGCCAAUGGAGUUUGUCAUUUGUCAAAUGCAAACGGCACACAAUCU---- ----........((((((((--------------.(.....(..(((((((.((((.......)))).)))))))..)..(((((.....)))))).))))))))...---- ( -29.60, z-score = -1.18, R) >droAna3.scaffold_13266 16002104 100 + 19884421 ----UGCCAGGCAUUAGAGUG--------GUGGACGCUGGAGGAGGAGGAGAUAAAGUUGAAGGCCACUGGAGUUUGUCAUUUGUCAAAUGCAAAUGGAACAAAUCCCGACC ----..(((.(((((.(((((--------(..(((.(..(.((.......(((...))).....)).)..).)))..))))))....)))))...))).............. ( -23.80, z-score = 0.21, R) >droEre2.scaffold_4845 10843490 75 - 22589142 --------------------------------CAUCGUGUUUGGGGGUCCAGUGGCAC-GAAGGCCGCUGGAGUUUGUCAUUUGUCAAAUGCAAACGGCACACAAUCU---- --------------------------------....(((((......(((((((((..-....)))))))))(((((.((((.....)))))))))))))).......---- ( -28.00, z-score = -2.68, R) >droYak2.chr2R 8641323 80 + 21139217 ----------------------------CAUCGUAUGUAUCCCGAGGUCCAGUGGUGUUCAAGGCCGGUGGAGUUUGUCAUUUGUCAAAUGCAAACAGCACACAAUCU---- ----------------------------....((.(((.........((((.((((.......)))).))))(((((.((((.....))))))))).))).)).....---- ( -19.70, z-score = -0.67, R) >droSec1.super_9 29538 108 - 3197100 CAUCCUGUGUGUGUGUGUGUGGCGGGGGAAAGUGGGGGAGAGUGGGCUCCAGUGGUGCUCAAGGCCGGUGGAGUUUGUCAUUUGUCAAAUGCAAACGGCACACAAUCU---- ...............((((((.((...(....(((.(((..(..(((((((.((((.......)))).)))))))..)..))).)))....)...)).))))))....---- ( -37.20, z-score = -1.15, R) >droSim1.chr2R 15355355 97 - 19596830 CAUCCUCUGCGUGUGUGUGU-----------GUGGCGGAGAGUGGGCUCCAGUGGUGCUCAAGGCCGGUGGAGUUUGUCAUUUGUCAAAUGCAAACGGCACACAAUCU---- ..........((((((.(((-----------.(((((((..(..(((((((.((((.......)))).)))))))..)..)))))))...)))....)))))).....---- ( -36.70, z-score = -1.71, R) >consensus ____C_C___GU_UGUGUGU___________GGAGGGGAGAGUGGGCUCCAGUGGUGCUCAAGGCCGGUGGAGUUUGUCAUUUGUCAAAUGCAAACGGCACACAAUCU____ ...............................................((((.((((.......)))).))))(((((.((((.....)))))))))................ (-12.57 = -12.97 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:23 2011