| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,703,229 – 16,703,324 |
| Length | 95 |
| Max. P | 0.561096 |
| Location | 16,703,229 – 16,703,324 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 70.63 |
| Shannon entropy | 0.51412 |
| G+C content | 0.59948 |
| Mean single sequence MFE | -39.18 |
| Consensus MFE | -19.22 |
| Energy contribution | -18.42 |
| Covariance contribution | -0.80 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.561096 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16703229 95 - 21146708 CAGAAUGGCCUAAAAACAUGGUCA------------------GGAUCCGG----CUGGAGUUCGAGUUCCAGUCCGGC-UCCCGACAGCUGAUGCUGAUGCUGAUGACGGACGUGACA .....(((((.........)))))------------------(((.((((----((((((......)))))).)))).-)))...((((....))))((((((....))).))).... ( -32.90, z-score = -1.13, R) >droAna3.scaffold_13266 16001900 81 + 19884421 -------------CAGCCUGGUCCA-----------------GGGUCCAGUGUCCGUGGGUCCCGGCCUGAGUCCGAG-CCCUGACAG------CUGAUGCUGAUGACGGACGUGACA -------------....((((.(..-----------------..).)))).(((((((((..(.(((....))).)..-)))...(((------(....))))...))))))...... ( -31.00, z-score = -0.10, R) >droEre2.scaffold_4845 10843216 114 - 22589142 AAGGAGGGCCUGAAAACAUGGUCAGGAUCCGCAUCCGGAUCCGAGGACGG---CCUGGAGUUCGAGUUCCAGUCCGGG-UCCCGACAGCUGAUGCUGAUGCUGAUGACGGACGUGACA ...(.((((((.........(((.(((((((....)))))))...)))((---.((((((......)))))).)))))-))))..((((....))))((((((....))).))).... ( -43.60, z-score = -0.61, R) >droYak2.chr2R 8641047 108 + 21139217 AAGGACGGCCUAAAAACAUGGUCAGG------AUCCGGAUCCGAGCACGG---CCUGGAGUUCGAGUUCCAGUCCGGG-UCCCGACAGCUGAUGCUGAUGCUGAUGACGGACGUGACA .(((....))).....((((((((((------((((((((..((((.((.---.(....)..)).))))..)))))))-)))...((((....)))).......))))...))))... ( -38.90, z-score = -0.64, R) >droSec1.super_9 29290 96 - 3197100 CAGGACGGCCUAAAAACAUGGUCA------------------GGAUCCGG----CUGGAGUUCGAGCUCCAGCUCGGGCUCCCGACAGCUGAUGCUGAUGCUGAUGACGGACGUGACA .(((....))).........((((------------------.(.((((.----(.(((((((((((....))))))))))).).((((....))))..........))))).)))). ( -39.90, z-score = -2.41, R) >droSim1.chr2R 15355087 108 - 19596830 CAGGACGGCCUAAAAACAUGGUCAGGAUCCGGCUCUGAGCACGGAUCCGG----CUGGAGUUCGAGCUCCAGCUCGGGCUCCCGACAG------CUGAUGCUGAUGACGGACGUGACA ....(((.((.........((((.(((((((((.....)).)))))))))----))(((((((((((....)))))))))))((.(((------(....)))).))..)).))).... ( -48.80, z-score = -2.88, R) >consensus CAGGACGGCCUAAAAACAUGGUCAG_________________GGAUCCGG____CUGGAGUUCGAGCUCCAGUCCGGG_UCCCGACAGCUGAUGCUGAUGCUGAUGACGGACGUGACA ....................(((...................(((..(((....((((((......)))))).)))...)))...((((....))))((((((....))).)))))). (-19.22 = -18.42 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:22 2011