| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,702,566 – 16,702,656 |
| Length | 90 |
| Max. P | 0.544963 |
| Location | 16,702,566 – 16,702,656 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 63.25 |
| Shannon entropy | 0.73397 |
| G+C content | 0.38445 |
| Mean single sequence MFE | -17.96 |
| Consensus MFE | -6.06 |
| Energy contribution | -6.01 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.58 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.544963 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16702566 90 + 21146708 ACAAACAUGGAUUAGAUGCUUCAUGAGUGGACUGGCAAAUACACUCACUUCCAUGACGUAUUUAAUUAGAAAUGCAAAAAGUUAACAACU------- .....(((.((((((((((.((((((((((..((.......)).)))))..))))).))))))))))....)))................------- ( -18.80, z-score = -2.16, R) >droSim1.chr2R 15354461 97 + 19596830 ACAAACAUGGAUUAGAAGCUGCAUGGGUGGACUCGCAAAUACACUCACUUCCAUGACGUAUUUAAUUAGAAGUGCAAAAAGUUAUUCACUUCUAACU .....((((((...(......).((((((............))))))..))))))..........(((((((((.((.......))))))))))).. ( -20.30, z-score = -1.53, R) >droSec1.super_9 28660 97 + 3197100 ACAAACAUGGAUUAGAAGCUGUAUGAGUGGACUCGCAAAUACACUCACUUCCAUGUCGUAUUUAAUUAGAAGUGCAAAAAGUUAUUCACUUCCAACU ....(((((((...((.(.(((((..(((....)))..))))))))...)))))))............((((((.((.......))))))))..... ( -20.00, z-score = -1.43, R) >droYak2.chr2R 8640354 97 - 21139217 ACAAACAUGGAUUAGAAACUGCAUGGGUGGACUUGCAGAUACACUCACUUUUAUGACGUAUUUAGAUAUAACGGUUACAAGUUUCUUACUUCCAACU .......((((..(((((((....(((((............)))))(((.(((((.(.......).))))).)))....)))))))....))))... ( -19.20, z-score = -1.61, R) >droEre2.scaffold_4845 10842551 93 + 22589142 ACAAACAUGGAUUAGGCACUGCAUGGGUGGACUCGCAAAUACACUUACUUUGAU--CCGAUUUUG-UAAAACUGGAUGAAUUAACUGUAUUGGUAU- .((..((((.(........).))))..)).....((.((((((.(((..((.((--(((.(((..-..))).))))).)).))).)))))).))..- ( -17.50, z-score = -0.62, R) >droAna3.scaffold_13266 16001460 73 - 19884421 ------GCAGGCCCCAAUUCGAGUGAGUCGACUUUAAAACACACUAGCUCCAUUAGCCAGGCUA---AGAGGCAAACCAACU--------------- ------....(((.(.....((((.(((..............))).))))..(((((...))))---)).))).........--------------- ( -11.94, z-score = 0.45, R) >consensus ACAAACAUGGAUUAGAAGCUGCAUGAGUGGACUCGCAAAUACACUCACUUCCAUGACGUAUUUAAUUAGAAGUGCAAAAAGUUACUCACUUC_AAC_ .....((((((............((((((............))))))..)))))).......................................... ( -6.06 = -6.01 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:21 2011