| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,691,907 – 16,691,997 |
| Length | 90 |
| Max. P | 0.687278 |
| Location | 16,691,907 – 16,691,997 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 72.57 |
| Shannon entropy | 0.44736 |
| G+C content | 0.57681 |
| Mean single sequence MFE | -32.52 |
| Consensus MFE | -19.88 |
| Energy contribution | -21.88 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.687278 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 16691907 90 - 21146708 UGCGGCGGCCUUGUGUGUGGGUGGAGUGGGUGUGCUGGCGGUAGUUGCAAAGUUCAUGUUGCAGUUGCAGUUGCACAGAGUUGCCGUCGC .((((((((.((.((((..(.(...((.((....)).)).(((..(((((........)))))..)))).)..)))).))..)))))))) ( -35.50, z-score = -1.57, R) >droAna3.scaffold_13266 15991118 81 + 19884421 -GUGGGUGUCAUG-GUGGGGAUUUUGGGUGAUAACUUGUUGU-GCCACGGUGGCACAGUUGCAGUCGCAGAGCCUCAGAGUUGG------ -(.(((((((((.-((((.(....(((((....)))))...)-.)))).)))))))..((((....))))..)).)........------ ( -25.80, z-score = -0.61, R) >droSec1.super_9 18088 86 - 3197100 UGCGGCGGCCUUGUGUGUGGGUGGAGUGG----GCUGGUGGUAGCUGCAAAGUUCAUGUUGCAGUUGCAGUUGCACAGAGUUGCCGUUGC .((((((((.((.((((..(.(..((...----.))....((((((((((........))))))))))).)..)))).))..)))))))) ( -34.40, z-score = -1.52, R) >droSim1.chr2R 15343802 86 - 19596830 UGCGGCGGCCUUGUGUGUGGGUGGAGUGG----GCUGGUGGUAGCUGCAAAGUUCAUGUUGCAGUUGCAGUUGCACAGAGUUGCCGUUGC .((((((((.((.((((..(.(..((...----.))....((((((((((........))))))))))).)..)))).))..)))))))) ( -34.40, z-score = -1.52, R) >consensus UGCGGCGGCCUUGUGUGUGGGUGGAGUGG____GCUGGUGGUAGCUGCAAAGUUCAUGUUGCAGUUGCAGUUGCACAGAGUUGCCGUUGC .((((((((..(.(((((......((........))....((((((((((........))))))))))....))))).)...)))))))) (-19.88 = -21.88 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:19 2011