| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,688,945 – 16,689,002 |
| Length | 57 |
| Max. P | 0.671898 |
| Location | 16,688,945 – 16,689,002 |
|---|---|
| Length | 57 |
| Sequences | 7 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 72.43 |
| Shannon entropy | 0.55736 |
| G+C content | 0.47698 |
| Mean single sequence MFE | -15.61 |
| Consensus MFE | -7.95 |
| Energy contribution | -8.69 |
| Covariance contribution | 0.74 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.671898 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16688945 57 + 21146708 GGAUUGUUUUCUCGGGGGAAAGCGUGGGAAAUCUUACGCCAAGGUCGCCCAAAGGAU ........((((..(((((..(((((((....))))))).....)).)))..)))). ( -17.90, z-score = -1.02, R) >droSim1.chr2R 15340877 57 + 19596830 GGAUUGUUUUCUCGGGGGAAAGCGUGGGAAAUCUUACGCCAAGGUCGCCCUAAGGAU ........((((..(((((..(((((((....))))))).....)).)))..)))). ( -19.60, z-score = -1.49, R) >droSec1.super_9 15180 57 + 3197100 GGAUUGUUUUCUCGGGGGAAAGCGUGGGAAAUCUUACGCCAAGGUCGCCUUAAGGAU ........((((..(((((..(((((((....))))))).....)).)))..)))). ( -17.80, z-score = -1.32, R) >droYak2.chr2R 8626467 57 - 21139217 GGUUUGUUUUCUCGAGGGAAAGCGAGGGAAAUCUUACGCCAAGGUCGUCCAAUAGAU ...(((((((((....)))))))))(((..(((((.....)))))..)))....... ( -14.90, z-score = -0.94, R) >droEre2.scaffold_4845 10828912 57 + 22589142 GGUUUGCUUUCUCGAGGGAAAGCGUGGGAAAUCUUACGCCAAGGUCGCCCAAAGGAU .....(((((((....))))))).((((..(((((.....)))))..))))...... ( -19.10, z-score = -1.41, R) >droAna3.scaffold_13266 15987047 56 - 19884421 GGUUUGUUUGCAUUAAAGAAAGCGCGGAAUAUCUUAUUCCAAGGACACUGAAGGAA- .((((((((.(......).))))..((((((...))))))..))))..........- ( -7.10, z-score = 0.77, R) >droGri2.scaffold_15245 16043747 52 + 18325388 ---AGGUUGUCAUAAGUCGAAUCAU--AAAUUGCGACUCCCAGGACAACAAAUGAUU ---..((((((...((((((((...--..))).))))).....))))))........ ( -12.90, z-score = -2.46, R) >consensus GGAUUGUUUUCUCGAGGGAAAGCGUGGGAAAUCUUACGCCAAGGUCGCCCAAAGGAU .....(((((((....)))))))..(((..(((((.....)))))..)))....... ( -7.95 = -8.69 + 0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:19 2011