| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,682,712 – 16,682,772 |
| Length | 60 |
| Max. P | 0.656692 |
| Location | 16,682,712 – 16,682,772 |
|---|---|
| Length | 60 |
| Sequences | 5 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 96.67 |
| Shannon entropy | 0.05643 |
| G+C content | 0.54000 |
| Mean single sequence MFE | -18.54 |
| Consensus MFE | -17.58 |
| Energy contribution | -17.38 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.656692 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16682712 60 - 21146708 GCUCAAACGAGUGGCUCGCAGUCGAGAUGGAACUGCCACUUGGCCAAGAUACUAUGGCCA ........(((((((......((......))...)))))))(((((........))))). ( -19.20, z-score = -1.33, R) >droSim1.chr2R 15333717 60 - 19596830 GCUCAAACGAGUGGCUCGCAGUCGAGAUGGAACUGCCACUUGGCCAAGAUACUAUGGCCA ........(((((((......((......))...)))))))(((((........))))). ( -19.20, z-score = -1.33, R) >droSec1.super_9 8380 60 - 3197100 GCUCAAACGAGUGGCUCGCAGUCGAGAUGGAACUGCCACUUGGCCAAGAUACUAUGGCCA ........(((((((......((......))...)))))))(((((........))))). ( -19.20, z-score = -1.33, R) >droYak2.chr2R 8620020 60 + 21139217 GCUCAAACGACUGGUUCGCAGUCAAGAUGGAACUGCCACUUGGCCAAGAUACUAUGGCCA ........(((((.....)))))(((.(((.....))))))(((((........))))). ( -18.10, z-score = -1.69, R) >droEre2.scaffold_4845 10822643 60 - 22589142 GCUCAAACGAGUGGUUCGCAGUCAAGAUGGAACUGCCACUUGGCCGAGAUACUAUGGCCA ((.((....((((.((((..((((((.(((.....))))))))))))).)))).)))).. ( -17.00, z-score = -0.70, R) >consensus GCUCAAACGAGUGGCUCGCAGUCGAGAUGGAACUGCCACUUGGCCAAGAUACUAUGGCCA ........(((((((......((......))...)))))))(((((........))))). (-17.58 = -17.38 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:17 2011