| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,681,973 – 16,682,064 |
| Length | 91 |
| Max. P | 0.593343 |
| Location | 16,681,973 – 16,682,064 |
|---|---|
| Length | 91 |
| Sequences | 8 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 91.45 |
| Shannon entropy | 0.17291 |
| G+C content | 0.43615 |
| Mean single sequence MFE | -20.49 |
| Consensus MFE | -16.44 |
| Energy contribution | -17.25 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.593343 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16681973 91 - 21146708 CUGUUGUCCCGUUGGCCGCAGAUUUAUGCCGCUGCCAAAAACUUUUUUAACAACAUCCGAAAUUUACGAUUUUCGGAACACGCAACACUGA .((((((....(((((.((.(.......).)).))))).................(((((((........)))))))....)))))).... ( -21.80, z-score = -2.20, R) >droSim1.chr2R 15333045 91 - 19596830 CUGUUGUCCCGUUGGCCGCAGAUUUAUGCCGCUGCCAAAAACUUUUUUAACAACAUCCGAAAUUUACGAUUUUCGGAACACGCAACACUGA .((((((....(((((.((.(.......).)).))))).................(((((((........)))))))....)))))).... ( -21.80, z-score = -2.20, R) >droSec1.super_9 7679 91 - 3197100 CUGUUGUCCCGUUGGCCGCAGAUUUAUGCCGCUGCCAGAAACUUUUUUAACAACAUCCGAAAUUUACGAUUUUCGGAACACGCAACACUGA .((((((...(..(((.(((......))).)))..)...................(((((((........)))))))....)))))).... ( -21.50, z-score = -1.89, R) >droYak2.chr2R 8619301 89 + 21139217 CUGUUGUCCUGUUGGCCGCAGAUUUAUGCCGCUGCCA-AAAC-UUUUUAACAACAUCCGAAAUUUACGAUUUUCGGAACACGCAACACUGA .((((((..((..(((.(((......))).)))..))-....-............(((((((........)))))))....)))))).... ( -22.00, z-score = -2.40, R) >droEre2.scaffold_4845 10821937 90 - 22589142 CUGUUGUCCUGUUGGCCGCAGAUUUAUGCCGCUGCCA-AAACUUUUUUAACAACAUCCGAAAUUUACGAUUUUCGGAACACGCAACACUGA .((((((..((..(((.(((......))).)))..))-.................(((((((........)))))))....)))))).... ( -22.00, z-score = -2.42, R) >droAna3.scaffold_13266 15980529 85 + 19884421 ---CUGUU--GUUGGCCGCAGAUUUAUGCCGCUGCCAAAAACUUUUUUAACAACAUCCGAAAUUUACGAUUUUCGGAACACG-AACGCGGC ---.((((--((((((.(((......))).)))...((((....)))))))))))(((((((........))))))).....-........ ( -19.40, z-score = -0.96, R) >dp4.chr3 11304257 88 + 19779522 UUGUUGUUC-GCUGGCCGCAGAUUUAUGCCUCUGCCA-AAAGUUUUUUAACAACAUCCAGAAUUUACGAUUUUCGGAACACGC-ACACAGA .((((((((-.((((..(((((........)))))..-...(((....))).....))))......((.....))))))).))-)...... ( -17.70, z-score = -0.81, R) >droPer1.super_4 4804401 88 + 7162766 UUGUUGUUC-GCUGGCCGCAGAUUUAUGCCUCUGCCA-AAAGUUUUUUAACAACAUCCAGAAUUUACGAUUUUCGGAACACGC-ACACAGA .((((((((-.((((..(((((........)))))..-...(((....))).....))))......((.....))))))).))-)...... ( -17.70, z-score = -0.81, R) >consensus CUGUUGUCC_GUUGGCCGCAGAUUUAUGCCGCUGCCA_AAACUUUUUUAACAACAUCCGAAAUUUACGAUUUUCGGAACACGCAACACUGA .((((((.....((((.(((......)))....))))..................(((((((........)))))))....)))))).... (-16.44 = -17.25 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:16 2011