| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,678,296 – 16,678,354 |
| Length | 58 |
| Max. P | 0.968747 |
| Location | 16,678,296 – 16,678,354 |
|---|---|
| Length | 58 |
| Sequences | 5 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 75.30 |
| Shannon entropy | 0.44476 |
| G+C content | 0.43115 |
| Mean single sequence MFE | -15.10 |
| Consensus MFE | -11.32 |
| Energy contribution | -12.20 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.80 |
| SVM RNA-class probability | 0.968747 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16678296 58 + 21146708 GGGAUCAUAUACCGCAUAUGGUCCGUAGCUUUCGUAGGGACUAUAAACUGUGUAAAGU .(((((((((.....)))))))))...((((((((((..........))))).))))) ( -14.50, z-score = -1.11, R) >droSim1.chr2R 15329358 58 + 19596830 GGGAUCAUAUAUCACAUAUGGUCCGUAGCUUUCGUAGGGACUAUAAACUGUGUAAAGU .(((((((((.....)))))))))...((((((((((..........))))).))))) ( -14.50, z-score = -1.79, R) >droSec1.super_9 4017 55 + 3197100 -GGACCAUAU--CACAUAUGGUCCGUAGCUUUCGUAGGGACUAUAAACUGUGUAAAGU -(((((((((--...)))))))))...((((((((((..........))))).))))) ( -16.20, z-score = -2.37, R) >droYak2.chr2R 8615491 58 - 21139217 GGGAUCAUAUACGGCAUAUGGUCCGUAGCUUUCGUAGGGAGCAUAAACUGCGUAAAGU .(((((((((.....)))))))))...((((((((((..........))))).))))) ( -19.30, z-score = -3.19, R) >droAna3.scaffold_13266 15976272 54 - 19884421 -GGGUUAUGCCCUGGAUAAGGCCCGUAUCCUGGAUA---UCCAUAAAGACUAUAAUAC -(((.....)))((((((...((........)).))---))))............... ( -11.00, z-score = 0.17, R) >consensus GGGAUCAUAUACCGCAUAUGGUCCGUAGCUUUCGUAGGGACUAUAAACUGUGUAAAGU .(((((((((.....)))))))))...((((((((((..........))))).))))) (-11.32 = -12.20 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:14 2011