| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,660,901 – 16,660,959 |
| Length | 58 |
| Max. P | 0.920178 |
| Location | 16,660,901 – 16,660,959 |
|---|---|
| Length | 58 |
| Sequences | 7 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 74.17 |
| Shannon entropy | 0.53672 |
| G+C content | 0.48080 |
| Mean single sequence MFE | -18.69 |
| Consensus MFE | -8.08 |
| Energy contribution | -8.06 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.54 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.920178 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16660901 58 - 21146708 GGCACUUUUGGCUUUGGCCAAGACACAAUGG-UGUCG-AUUUAGACCUGUCAAUAGCCAA (((....(((((....)))))(((((....)-))))(-((........)))....))).. ( -19.30, z-score = -2.50, R) >droSim1.chr2R 15316739 58 - 19596830 GGCACUUUUGGCUUUGGCCAAGACACAAUGG-UGUCG-AUUUGGACCUGUCAAUGGCCAA (((....(((((...(((((((((((....)-)))).-..)))).)).)))))..))).. ( -22.40, z-score = -2.71, R) >droSec1.super_1 14208159 58 - 14215200 GGCACUUUUGACUUCGGCCAAGACACAAUGG-UGUCG-AUUUGGACCUGUCAAUGGCCAA (((....(((((...(((((((((((....)-)))).-..)))).)).)))))..))).. ( -22.30, z-score = -3.18, R) >droYak2.chr2R 8602951 53 + 21139217 GGCACUUUUG------GCCAAAACACAAUGGUUUUAG-AUUUGGACCUGUCAAUGGCCAA .......(((------((((....(((..(((((...-....))))))))...))))))) ( -13.90, z-score = -0.96, R) >droEre2.scaffold_4845 10808977 58 - 22589142 GGCACUUUUGGCUUUGGCCAAGACACAAUGG-UGUAG-ACUUGGACCUGUCAAUGGCCAA (((....(((((...(((((((((((....)-)))..-.))))).)).)))))..))).. ( -22.10, z-score = -2.51, R) >droAna3.scaffold_13266 15961191 58 + 19884421 GGCACUUUUGGCAUUUGCCGAGACACAAUGG-UUCAG-UUUCUGAGCUGUCAAUGGCCAU (((..(((((((....)))))))((..((((-(((((-...)))))))))...))))).. ( -20.50, z-score = -2.42, R) >droGri2.scaffold_15245 16021921 60 - 18325388 GACUGUUAUGGCCCACAACAACAAACAACACGAACAACAGAUGGCCGUGUCAUUCACUGG ((.((.(((((((.............................))))))).)).))..... ( -10.35, z-score = 0.04, R) >consensus GGCACUUUUGGCUUUGGCCAAGACACAAUGG_UGUAG_AUUUGGACCUGUCAAUGGCCAA (((....(((((.....(((((.................)))))....)))))..))).. ( -8.08 = -8.06 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:14 2011