| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,658,873 – 16,658,970 |
| Length | 97 |
| Max. P | 0.767559 |
| Location | 16,658,873 – 16,658,970 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 85.67 |
| Shannon entropy | 0.26143 |
| G+C content | 0.46856 |
| Mean single sequence MFE | -26.48 |
| Consensus MFE | -21.68 |
| Energy contribution | -22.60 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.767559 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16658873 97 - 21146708 GCAACAACAAUUAGCCGAGAUGCAACCCAAGCGAUGUUGAUUGUUAUUUUUGCCGUGUUCUGAGUGACAGGACGGGGCAGAAAGGGACAGAACAUGC (((..((((((((((.....(((.......)))..)))))))))).((((((((.(((((((.....))))))).))))))))...........))) ( -30.80, z-score = -2.70, R) >droSim1.chr2R 15314473 87 - 19596830 GCAACAACAAUUAGCCGAGAUGCAACUCAAGCGAUGUUGAUUGUUAUUUUUGUCGUGUUCUGAGUGACAGGAAGGGACAGUAUAUGC---------- (((.(((((....((.(((......)))..))..)))))((((((.(((((((((.........)))))))))..))))))...)))---------- ( -20.80, z-score = -0.55, R) >droSec1.super_1 14206306 97 - 14215200 GCAACAACAAUUAGCCGAGAUGCAACUCAAGCGAUGUUGAUUGUUAUUUUUGCCGUGUUCUGAGUGACAGGAAGGGACAGGAAGGGACAUAGCAUGC ((..(((((....((.(((......)))..))..)))))..((((.((((((((.(.(((((.....)))))).)).))))))..))))..)).... ( -22.90, z-score = -0.26, R) >droYak2.chr2R 8600881 97 + 21139217 GCAACAACAAUUAGCCGAGAUGCAACUCAAGCGAUGUUGAUUGUUAUUUUUGCCGUGUCCUGAGUGACAGGACGAGGGGAAAAGAGAGAGAACGUGU (((((((((((..((.(((......)))..))...)))).))))).(((((.((.(((((((.....))))))).)).)))))..........)).. ( -26.40, z-score = -1.75, R) >droEre2.scaffold_4845 10806986 97 - 22589142 GCAACAACAAUUAGCCGAGAUGCAACUCAAGCGAUGUUGAUUGUUAUUUUUGCCGUGUCCUGGGUGAGAGGACGAGGGCGAAAGGGACAGAGCAUGC ((..(((((....((.(((......)))..))..))))).(((((.((((((((.((((((.......))))))..)))))))).))))).)).... ( -31.50, z-score = -2.35, R) >consensus GCAACAACAAUUAGCCGAGAUGCAACUCAAGCGAUGUUGAUUGUUAUUUUUGCCGUGUUCUGAGUGACAGGACGGGGCAGAAAGGGACAGAACAUGC .....((((((((((.....(((.......)))..)))))))))).((((((((.(((((((.....))))))).)))))))).............. (-21.68 = -22.60 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:11 2011