| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,640,878 – 16,640,975 |
| Length | 97 |
| Max. P | 0.983776 |
| Location | 16,640,878 – 16,640,975 |
|---|---|
| Length | 97 |
| Sequences | 7 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 70.36 |
| Shannon entropy | 0.55246 |
| G+C content | 0.61371 |
| Mean single sequence MFE | -41.27 |
| Consensus MFE | -14.72 |
| Energy contribution | -15.58 |
| Covariance contribution | 0.85 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.82 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.15 |
| SVM RNA-class probability | 0.983776 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16640878 97 - 21146708 AGACGACCCGCUUCCUCUUCCUCAUCAGCCGAUCGCUUGCCACUGCCGGAAUGUGAUGGCUUGUGUGUUGGCGGUGGUGGAGGUGGUGGUGGGUAUG .....(((((((.((.((((((((((.(((((((((..((((..((......))..))))..))).))))))))))).))))).)).)))))))... ( -48.20, z-score = -4.18, R) >droSim1.chr2R 15296541 91 - 19596830 AGACGACCUGCUUCCUCCUCCUCAUCCGCCGAUCGCUGGCCACCGCCGGAAUGUGGUGGCUUGUGUGUUGGCGGAGG------UGGUGGUGGGUAAG .....(((..((.((.(((((......(((((((((.(((((((((......))))))))).))).)))))))))))------.)).))..)))... ( -48.80, z-score = -4.36, R) >droSec1.super_1 14188762 91 - 14215200 AGACGACUCGCUUCCUCCUCCUCAUCUGCCGAUCGCUUGCCACCGCCGGAAUGUGGUGGCUUGUGUGUUGGCGGAAG------UGGUGGUGGGUAUG ............(((.((.((.(.((((((((((((..((((((((......))))))))..))).))))))))).)------.)).)).))).... ( -43.80, z-score = -4.12, R) >droYak2.chr2R 8582524 94 + 21139217 AGAUGACCCGCCUCCUCAUCAUCAUCCACCGAUCGCUUGUCUCCGCCGGAAUGCGAUGGCUUGUGUGUUGGCGGAGGU---GGUGGUGGUGGGUAGG .....(((((((...((((((((.(((.((((((((..(((..(((......)))..)))..))).))))).))))))---))))).)))))))... ( -44.10, z-score = -2.75, R) >droEre2.scaffold_4845 10785757 91 - 22589142 AGACGACCCGCUUCCUCAUCGUCGUCCACGGAUCGCCUGUUUCCGCCGGUUUGCGGUGGCUUCUGGGAUCCUGGAGA------UGGUGGUGGGUAGG ...(.((((((.....(((((((.((((.(((((.((.(...((((((.....))))))...).)))))))))))))------))))))))))).). ( -43.00, z-score = -2.41, R) >dp4.chr3 11270773 85 + 19779522 AGGCGGCUCACGUCCUCUGGCGCUUCGAUCGAACGAUCG-----AACGAA---CGAU-GCUUGUGGCUUGGUGGUGGU---GGGGGUGGCGGAAAGG ...(.((.(((.(((.(((.((((((((((....)))))-----))....---(((.-((.....)))))))).))).---))).))))).)..... ( -29.80, z-score = -0.39, R) >droPer1.super_4 4770705 85 + 7162766 AGGCGGCUCACGUCCUCUGGCGCUUCGAUCGAACGAUCG-----AACGAA---CGAU-GCUUGUGGUUUGGUGGUGGU---GGGGGUGGUGGAAAGG ...(.((.(((.(((.(((.((((((((((....)))))-----))((((---(.((-....)).)))))))).))).---))).))))).)..... ( -31.20, z-score = -1.51, R) >consensus AGACGACCCGCUUCCUCUUCCUCAUCCACCGAUCGCUUGCCACCGCCGGAAUGCGAUGGCUUGUGUGUUGGCGGAGGU___GGUGGUGGUGGGUAGG .....(((((((.((..........(.((((((((...(((..(((......)))..)))...)).)))))).)..........)).)))))))... (-14.72 = -15.58 + 0.85)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:07 2011