| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,626,557 – 16,626,650 |
| Length | 93 |
| Max. P | 0.606539 |
| Location | 16,626,557 – 16,626,650 |
|---|---|
| Length | 93 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.17 |
| Shannon entropy | 0.26600 |
| G+C content | 0.36613 |
| Mean single sequence MFE | -21.99 |
| Consensus MFE | -16.13 |
| Energy contribution | -15.64 |
| Covariance contribution | -0.49 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.606539 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 16626557 93 - 21146708 -----------------------GAAAUGCAUUUUCAUUUUUCUUGAUUUCGCGCAUAAAAUGCGCAUAAGCCUA----UAUGGCCAUAAACAUUUGGAGCGAUGAACUUUGCUGAACAG -----------------------.....(((..((((((.((((.(((...((((((...))))))....(((..----...))).......))).)))).))))))...)))....... ( -23.20, z-score = -1.87, R) >droSim1.chr2R 15286910 93 - 19596830 -----------------------GAAAUGCAUUUUCAUUUUUCUUGAUUUCGCGCAUAAAAUGCGCAUAAGCCUA----UAUGGCCAUAAACAUUUGGAGCGAUGAACUUUGCUGAGCAG -----------------------.....(((..((((((.((((.(((...((((((...))))))....(((..----...))).......))).)))).))))))...)))....... ( -23.20, z-score = -1.20, R) >droSec1.super_1 14179233 93 - 14215200 -----------------------GAAAUGCAUUUUCAUUUUUCUUGAUUUCGUGCAUAAAAUGCGCAUAUGCCUA----UAAGGCCAUAAACAUUUGGAGCGAUGAACUUUGCUGAGCAG -----------------------.....(((..((((((.((((.(((...((((((...)))))).((((((..----...)).))))...))).)))).))))))...)))....... ( -21.30, z-score = -0.67, R) >droYak2.chr2R 8572774 89 + 21139217 -----------------------GAAAUGCAUUUUCAUUUUUCUUGAUUUCGCGCAUAAAAUGCGCAUAAGCCUA----UAUGGCCAUAAACAUUUGGAGCGAUGAACUUUGCUGU---- -----------------------.....(((..((((((.((((.(((...((((((...))))))....(((..----...))).......))).)))).))))))...)))...---- ( -23.20, z-score = -1.79, R) >droEre2.scaffold_4845 10776118 89 - 22589142 -----------------------GAAAUGCAUUUUCAUUUUUCUUGAUUUCGUGCAUAAAAUGCGCAUAAGCCUA----UAUGGCCAUAAACAUUUGGAGCGAUGAACUUUGCUGU---- -----------------------.....(((..((((((.((((.(((...((((((...))))))....(((..----...))).......))).)))).))))))...)))...---- ( -21.30, z-score = -1.28, R) >droAna3.scaffold_13266 15932595 113 + 19884421 UAUGGAGAGCAGCAGAAGGAGCUGAAAUGCAUUUUCAUUUUUCUUGAUUUCGCGCAUAAAAUGCGCAUAAGCCUA----UAUGCCCAUAAACAUUUAGAGCGAUGAACUUUGCAAAG--- .........((((.......))))...((((..((((((............((((((...))))))....(((((----.(((........))).))).))))))))...))))...--- ( -26.40, z-score = -0.58, R) >droPer1.super_4 4760471 88 + 7162766 -----------------------CGAAUGCAUUUUCAUUUUUCUUGAUUUCGCGCAUAAAAUGCGCAUAAGCCUA----UAUGGCCAUAAACAUUUAGACCAAUGAACUUUGCAC----- -----------------------....((((..((((((..(((.(((...((((((...))))))....(((..----...))).......))).)))..))))))...)))).----- ( -22.60, z-score = -3.43, R) >dp4.chr3 11260497 88 + 19779522 -----------------------CGAAUGCAUUUUCAUUUUUCUUGAUUUCGCGCAUAAAAUGCGCAUAAGCCUA----UAUGGCCAUAAACAUUUAGAGCAAUGAACUUUGCAC----- -----------------------....((((..((((((.((((.(((...((((((...))))))....(((..----...))).......))).)))).))))))...)))).----- ( -24.00, z-score = -3.20, R) >droWil1.scaffold_181141 4782021 88 - 5303230 -----------------------AAAAUGCAUUUUCAUUUUUCUUGAUUUCGCGCAUAAAAUGCGCAUAAGCCUA----UAUGCCCAUAAACAUUUGGGGCAAUGAACUUUUCUA----- -----------------------..........((((((............((((((...))))))....((((.----.(((........)))...))))))))))........----- ( -18.60, z-score = -1.20, R) >droVir3.scaffold_12823 375922 91 + 2474545 -----------------------AAAAUGCAUUUUCAUUUUUCUUGAUUUCGCGCAUAAAAUGCGCAUAAGCCUAUGCCCAUAAACAUAAACAUUUGGAGCAAUGAACUUUGCG------ -----------------------.....(((..((((((.((((.(((...((((((...)))))).......((((........))))...))).)))).))))))...))).------ ( -19.60, z-score = -1.37, R) >droGri2.scaffold_15245 15988557 91 - 18325388 -----------------------AAAAUGCAUUUUCAUUUUUCUUGAUUUCGCGCAUAAAAUGCGCAUAAGCCUAUGCCCAUAAACAUAAACAUUUGGAGCAAUGAACUUUGCG------ -----------------------.....(((..((((((.((((.(((...((((((...)))))).......((((........))))...))).)))).))))))...))).------ ( -19.60, z-score = -1.37, R) >droMoj3.scaffold_6496 25439052 91 + 26866924 -----------------------AAAAUGCAUUUUCAUUUUUCUUGAUUUCGCGCAUAAAAUGCGCAUAAGCCUAGGCCCAUAAACAUAAACAUUUGGAGCAAUGAACUUUGCG------ -----------------------.....(((..((((((.((((.(((...((((((...))))))....((....))..............))).)))).))))))...))).------ ( -20.90, z-score = -1.81, R) >consensus _______________________GAAAUGCAUUUUCAUUUUUCUUGAUUUCGCGCAUAAAAUGCGCAUAAGCCUA____UAUGGCCAUAAACAUUUGGAGCAAUGAACUUUGCUG_____ ............................(((..((((((.((((.(....)((((((...))))))..............................)))).))))))...)))....... (-16.13 = -15.64 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:05 2011