| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,624,607 – 16,624,702 |
| Length | 95 |
| Max. P | 0.957800 |
| Location | 16,624,607 – 16,624,702 |
|---|---|
| Length | 95 |
| Sequences | 10 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 72.78 |
| Shannon entropy | 0.52881 |
| G+C content | 0.40789 |
| Mean single sequence MFE | -16.75 |
| Consensus MFE | -9.40 |
| Energy contribution | -9.56 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.65 |
| SVM RNA-class probability | 0.957800 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16624607 95 - 21146708 ----------------------CCCAUCCCUUGUCGACUAAGAAAGGUAGCGUUUACGCUUGAUUACAUUUACGCUGGUAAACA-AAUUUUUCCA-GAAGCAUCAACAACACCUUUCUU ----------------------.................(((((((((((((....))))..............((((.(((..-...))).)))-).............))))))))) ( -18.50, z-score = -1.92, R) >droSim1.chr2R 15285005 95 - 19596830 ----------------------UCCAUCCCUCCACGACUAAGAAAGGUAGCGUUUACGCUUGAUUACAUUCACGCUGGUAAACA-AAUUUUUCCA-GAAGCAUCAACAACACCUUUCUU ----------------------.................(((((((((...((((((((.(((......))).))..)))))).-..........-((....))......))))))))) ( -18.60, z-score = -2.70, R) >droSec1.super_1 14177313 95 - 14215200 ----------------------UCCAUCCCUCCAUGACUAAGAAAGGUAGCGUUUACGCUUGAUUACAUUCACGCUGGUAAACA-AAUUUUUCCA-GAAGCAUCAACAACACCUUUCUU ----------------------.................(((((((((...((((((((.(((......))).))..)))))).-..........-((....))......))))))))) ( -18.60, z-score = -2.48, R) >droYak2.chr2R 8570779 92 + 21139217 ----------------------UCCACCCCU---CAACUAAGAAAGGUAGCGUUUACGCUUGAUUACAUUCACGCUGGUAAACA-AAUUUUUCCA-GAAGCAUCAACAACACCUUUCUU ----------------------.........---.....(((((((((...((((((((.(((......))).))..)))))).-..........-((....))......))))))))) ( -18.60, z-score = -3.14, R) >droEre2.scaffold_4845 10774249 92 - 22589142 -----------------------CCAGCCCCU--CGACUAAGAAAGGUAGCGUUUACGCUUGAUUACAUUCACGCUGGUAAACA-AAUUUUUCCA-GAAGCAUCAACAACACCUUUCUU -----------------------.........--.....(((((((((...((((((((.(((......))).))..)))))).-..........-((....))......))))))))) ( -18.60, z-score = -2.17, R) >droAna3.scaffold_13266 15930570 85 + 19884421 --------------------------------CUUAACUAAGCAAGGUAGCGCUUACGCUUGAUUACAUUUGCGCUGGUAAACA-AAUUUUUCCA-GAAGCUUCAACAACACCUUUCUU --------------------------------.......(((.(((((((((....))))...........((.((((.(((..-...))).)))-)..)).........))))).))) ( -14.90, z-score = -0.51, R) >dp4.chr3 11258703 116 + 19779522 AAUCCCCCAACCCUUCCCCCCUCCAAAUCAUCCUUAACUAAGGAAGGUAGCGCUUACGCUUGAUUACAUUCGCGCUGGUAAACA-AAUUUUUCCA-AAAGC-ACAACAACACCUUUCUU .......................................(((((((((((((....))))...........((..(((.(((..-...))).)))-...))-........))))))))) ( -17.30, z-score = -1.75, R) >droPer1.super_4 4758675 116 + 7162766 AAUCCCCCAACCCUUCCCCCCUCCAAAUCAUCCUUAACUAAGGAAGGUAGCGCUUACGCUUGAUUACAUUCGCGCUGGUAAACA-AAUUUUUCUA-GAAGC-ACAACAACACCUUUCUU .......................................(((((((((((((....))))...........((.((((.(((..-...))).)))-)..))-........))))))))) ( -17.30, z-score = -1.24, R) >droWil1.scaffold_181141 4776135 110 - 5303230 ---------CCCCGCCCUCCGCCAUCCGCAUCUUUUAGUUAACUACGAAGCGCUCUCGCUUGAUUACAUUCGCCCGGGUAAACACAAUUUUUUCAUUUGACAUUAACAACACCUUUUUU ---------....((((...((....(((.((...(((....))).)).))).....))..((......))....))))........................................ ( -11.70, z-score = 0.44, R) >droGri2.scaffold_15245 15985908 82 - 18325388 ---------------------------------UUCAUUUUUUGUUGUAUAG-UUACGCUUGAUUACUUUCACGCUGGUAAACA-AAUUUUU-UA-GCGGCAUCAACAACACCUUUUUG ---------------------------------.........((((((.(((-(((....)))))).......((((.((((..-.....))-))-.))))....))))))........ ( -13.40, z-score = -1.50, R) >consensus ______________________CCCAUCCCUCCUUAACUAAGAAAGGUAGCGUUUACGCUUGAUUACAUUCACGCUGGUAAACA_AAUUUUUCCA_GAAGCAUCAACAACACCUUUCUU .......................................(((((((((.........((.(((......))).)).((.(((......))).))................))))))))) ( -9.40 = -9.56 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:04 2011