| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,618,289 – 16,618,345 |
| Length | 56 |
| Max. P | 0.874557 |
| Location | 16,618,289 – 16,618,345 |
|---|---|
| Length | 56 |
| Sequences | 5 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 90.94 |
| Shannon entropy | 0.15654 |
| G+C content | 0.38264 |
| Mean single sequence MFE | -6.80 |
| Consensus MFE | -6.80 |
| Energy contribution | -6.80 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.12 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.874557 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16618289 56 - 21146708 AUGCUUAACUGCCUCCAUUACGGCAUGCAUCUUUCAUUAAAAAAAAAAACCAGUCU ((((.....((((........)))).)))).......................... ( -6.80, z-score = -1.22, R) >droEre2.scaffold_4845 10767813 50 - 22589142 AUGCUUAACUGCCUCCAUUACGGCAUGCAUCUUUCAUUAAA------AAAUAGUCU ((((.....((((........)))).))))...........------......... ( -6.80, z-score = -1.17, R) >droYak2.chr2R 8564344 51 + 21139217 AUGCUUAACUGCCUCCAUUACGGCAUGCAUCUUUCAUUAAAA-----AAUGUGUCU ((((.....((((........)))).))))............-----......... ( -6.80, z-score = -0.76, R) >droSec1.super_1 14171093 51 - 14215200 AUGCUUAACUGCCUCCAUUACGGCAUGCAUCUUUCAUUAAAA-----CACCAGUCU ((((.....((((........)))).))))............-----......... ( -6.80, z-score = -1.22, R) >droSim1.chr2R 15278684 51 - 19596830 AUGCUUAACUGCCUCCAUUACGGCAUGCAUCUUUCAUUAAAA-----CACCAGUCU ((((.....((((........)))).))))............-----......... ( -6.80, z-score = -1.22, R) >consensus AUGCUUAACUGCCUCCAUUACGGCAUGCAUCUUUCAUUAAAA_____AACCAGUCU ((((.....((((........)))).)))).......................... ( -6.80 = -6.80 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:39:02 2011