Locus 4944

Sequence ID dm3.chr2R
Location 16,610,431 – 16,610,494
Length 63
Max. P 0.709475
window6796

overview

Window 6

Location 16,610,431 – 16,610,494
Length 63
Sequences 6
Columns 70
Reading direction reverse
Mean pairwise identity 70.70
Shannon entropy 0.57910
G+C content 0.52971
Mean single sequence MFE -19.93
Consensus MFE -9.93
Energy contribution -10.23
Covariance contribution 0.31
Combinations/Pair 1.47
Mean z-score -1.10
Structure conservation index 0.50
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.47
SVM RNA-class probability 0.709475
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 16610431 63 - 21146708
AUAUCAUCAUGUGUGCUGAAGCGAAUAGAAGGCGAAAGUCAG-------UCUCGUGGAGUAGCGAGGCAG
......((.(((.(((....))).))))).(((....))).(-------((((((......))))))).. ( -19.10, z-score =  -2.19, R)
>droSim1.chr2R 15271042 70 - 19596830
AUAUCAUCAUGUGUGCUGAAGCGCAUAGAAGGCGAAAGUCAGGGCAGCUUCUCGUGGAGUAGCGAGGCAG
......((.(((((((....))))))))).(((....)))...((.(((((....))))).))....... ( -22.50, z-score =  -1.50, R)
>droSec1.super_1 14163451 70 - 14215200
AUAUCAUCAUGUGUGCUGAAGCGAAUAGAAGGCGAAAGUCAGGACCGCUUCUCGUGGAGUAGCGCGGCAG
.........(((((((((............(((....)))....((((.....))))..)))))).))). ( -19.20, z-score =  -0.12, R)
>droYak2.chr2R 8555800 67 + 21139217
ACAUCAUCAUGUGUGCUGAAGCGGAUAGGAGACGAAAGUCAGGA---GUCCGCGUGGAGUAGCGUUGCAG
((((......))))((((..((((((....(((....)))....---))))))......))))....... ( -20.00, z-score =  -1.25, R)
>droEre2.scaffold_4845 10760256 67 - 22589142
ACAUCAUCGUGUGUGCUGAAGCGGACAGGAGACGAAAGUCAGGA---CUCCUCGUGGAGUAGCGAGGCAG
......((.(((.(((....))).))).))(((....)))....---((((((((......)))))).)) ( -25.00, z-score =  -2.15, R)
>droGri2.scaffold_15245 15968978 61 - 18325388
---------UGUUUGCUCGAGCGCAUGUGAACUUCAAGUCUGUAUGCCAAGCGAGGACCUGGCUAAGACG
---------.(((..(..........)..))).....((((....((((.(......).))))..)))). ( -13.80, z-score =   0.60, R)
>consensus
AUAUCAUCAUGUGUGCUGAAGCGAAUAGAAGGCGAAAGUCAGGA___CUUCUCGUGGAGUAGCGAGGCAG
.........(((.(((....))).)))...(((....))).........((((((......))))))... ( -9.93 = -10.23 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:59 2011