| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,574,513 – 16,574,608 |
| Length | 95 |
| Max. P | 0.522148 |
| Location | 16,574,513 – 16,574,608 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 77.54 |
| Shannon entropy | 0.29472 |
| G+C content | 0.25808 |
| Mean single sequence MFE | -14.80 |
| Consensus MFE | -8.39 |
| Energy contribution | -8.72 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.522148 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16574513 95 - 21146708 AUUAUCUUUGUUGGUAAGGGCUUAUUUUUAUGCACUUCGAAAACAUUUAUUAGGAAUAAUUUUAAUAGUUGCCAACUUUAUUUUAAGUGUACUUU--- .........((((((((..((.((....)).)).............(((((((((....)))))))))))))))))...................--- ( -13.40, z-score = -0.10, R) >droSim1.chr2R 15236153 80 - 19596830 AUUAUCUUUGUUGGUAAGUGCUUCUUUU-----------------AUUAUUAAGAAUAAUUAUAACACUUGCCAACUUUAUUUCAAGUGUACUUUUG- .........(((((((((((......((-----------------(((......)))))......))))))))))).....................- ( -17.20, z-score = -3.76, R) >droSec1.super_1 14128866 81 - 14215200 AUUAUCUUUGUUGGUAAGGGCUUCUUUU-----------------AUUAUUACGAAUAAUUAUGAUACUUGCCAACUUUAUUUCAAGUGUUCUUUUUG .........(((((((((....((..((-----------------(((......)))))....))..)))))))))...................... ( -13.80, z-score = -2.27, R) >consensus AUUAUCUUUGUUGGUAAGGGCUUCUUUU_________________AUUAUUAAGAAUAAUUAUAAUACUUGCCAACUUUAUUUCAAGUGUACUUUU__ .........(((((((((.................................................)))))))))...................... ( -8.39 = -8.72 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:55 2011