| Sequence ID | dm3.chr2R |
|---|---|
| Location | 16,570,429 – 16,570,523 |
| Length | 94 |
| Max. P | 0.714636 |
| Location | 16,570,429 – 16,570,523 |
|---|---|
| Length | 94 |
| Sequences | 9 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 57.00 |
| Shannon entropy | 0.91749 |
| G+C content | 0.42014 |
| Mean single sequence MFE | -20.09 |
| Consensus MFE | -5.16 |
| Energy contribution | -5.38 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.26 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.714636 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 16570429 94 - 21146708 AUAAUUGAUGGGUAAUCAAUUAAAGAGCACUCUCC-------CAAACCCGUUAAAAGA--GUUUUGGCUACCGAUUUCUGGCCACAACUUGAGGUGAAAUCAC .((((((((.....))))))))..((.(((.(((.-------..............((--(((.((((((........)))))).)))))))))))...)).. ( -23.06, z-score = -1.68, R) >droSim1.chr2R 15232092 79 - 19596830 AUAAUUGAUGGGUAAUCAAUUAAAGCGCACUCUCC-------CAAACCCGUUAAAAGA--GUU---------------UGGCCACAACUUGAGGUGAAAUCAC .((((((((.....)))))))).....(((.((((-------(((((.(.......).--)))---------------))).........))))))....... ( -16.40, z-score = -1.01, R) >droSec1.super_1 14124812 79 - 14215200 AUAAUUGAUGGGUAAUCAAUUAAAGCGCACUCUCC-------CAAACCCGUUAAAAGA--GUU---------------UGGCCACAACUUGAGGUGAAAUCAC .((((((((.....)))))))).....(((.((((-------(((((.(.......).--)))---------------))).........))))))....... ( -16.40, z-score = -1.01, R) >droYak2.chr2R 8514977 103 + 21139217 AUAAUUGAUGGGUAAUCAAUUAAAGCGCACUCCCCACUCUCGCACUCCCGUAAAAAAAAGGCUUGUGCUACCGAGUUCUGGCCACAACUUGAGGUGAAAUCAC .((((((((.....))))))))............(((.(((((((..((..........))...))))....(((((........)))))))))))....... ( -21.10, z-score = -0.14, R) >droEre2.scaffold_4845 10719029 93 - 22589142 AUAAUUGAUGGGUAAUCAAUUAAAGCUCACUCUCG-------CACUCCCGUGAAAAGA--GUU-GUGCUGCCGCGUUCUGGCCACAACUUGAGGUGAAAUCAC .((((((((.....))))))))....((((.(((.-------(((....)))....((--(((-(((..((((.....)))))))))))))))))))...... ( -29.10, z-score = -2.89, R) >droAna3.scaffold_13266 15873549 95 + 19884421 AUAAUUGAUAGCCAAUCAAUUAAAACAAACUCCU--------CACGCUCUCGGAAAUAAAGAAAUACCACUGAGAGCCUUGAAAACACCUUGCGGCCAAUCAC .((((((((.....))))))))...........(--------((.((((((((................))))))))..)))..................... ( -17.19, z-score = -2.71, R) >dp4.chr3 11203163 102 + 19779522 AUAAUUGAUGGGCAAUCAAUUAAAACUGACUCUCUCCCUCACUCCCUUUUUCCCUAGAAAAGAAAGGAGCAUUCGCUUUGCUCAAAACCUUGAG-GCAAUCGC .((((((((.....))))))))..............(((((((..((((((.....))))))..))(((((.......))))).......))))-)....... ( -22.50, z-score = -1.41, R) >droPer1.super_4 4701977 102 + 7162766 AUAAUUGAUGGGCAAUCAAUUAAAACUGACACUCUCCCUCACUCCCUUUUUCCCUAGAAAAGAAAGGAGCAUUCGCUUUGCUCAAAACCUUGAG-GCAAUCGC .((((((((.....))))))))..............(((((((..((((((.....))))))..))(((((.......))))).......))))-)....... ( -22.50, z-score = -1.57, R) >droWil1.scaffold_181141 4673627 79 - 5303230 AUAUUUAAUGUUCAAUCAAUUAAAA-------CU--------CACGCCUAAAGUAGCAACCAGCUGAGCUUUUGGGCCUAGUCGGCACCAUUUG--------- ...((((((.........)))))).-------..--------....((.((((((((.....)))..))))).))(((.....)))........--------- ( -12.60, z-score = 0.24, R) >consensus AUAAUUGAUGGGUAAUCAAUUAAAGCGCACUCUCC_______CACACCCGUUAAAAGAA_GUU_UGGCUCCCGCGUUCUGGCCACAACUUGAGGUGAAAUCAC .((((((((.....))))))))................................................................................. ( -5.16 = -5.38 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:38:54 2011